NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25673.1 Public Mus musculus 11 Cygb 23 108 98 CCDS HistoryNCBI Gene:114886Re-query CCDS DB by CCDS ID:25673.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021166.5 ENSMUSP00000021166.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021166.5Link to Ensembl Protein Viewer:ENSMUSP00000021166.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021166Re-query CCDS DB by Protein ID:ENSMUSP00000021166
Original member NCBI NM_030206.4 NP_084482.1 Updated not alive Link to Nucleotide Sequence:NM_030206.4Link to Protein Sequence:NP_084482.1Re-query CCDS DB by Nucleotide ID:NM_030206Re-query CCDS DB by Protein ID:NP_084482
Current member NCBI NM_030206.5 NP_084482.1 Accepted alive Link to Nucleotide Sequence:NM_030206.5Link to Protein Sequence:NP_084482.1Re-query CCDS DB by Nucleotide ID:NM_030206Re-query CCDS DB by Protein ID:NP_084482Link to BLAST:NP_084482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084482.1 190 Q9CX80 190 100% 0 0

Chromosomal Locations for CCDS 25673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116646959 116646992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116649283 116649446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116649784 116650015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116653777 116653919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGAGAAAGTGCCGGGCGACATGGAGATAGAGCGTAGGGAGAGGAGCGAGGAGCTGTCCGAGGCGGAGA
GGAAGGCGGTTCAGGCTACGTGGGCCCGGCTGTATGCCAACTGCGAGGACGTGGGGGTGGCCATCCTGGT
GAGGTTCTTTGTGAACTTCCCTTCGGCCAAGCAGTACTTCAGCCAGTTTAGACACATGGAGGATCCCTTG
GAGATGGAGAGGAGTCCCCAGCTGCGGAAGCACGCCTGCCGGGTCATGGGGGCCCTCAACACTGTCGTGG
AGAACCTGCATGACCCAGACAAGGTATCCTCTGTGCTCGCCCTGGTCGGCAAGGCCCACGCCCTCAAGCA
CAAGGTGGAACCTATGTACTTTAAGATTCTCTCTGGGGTCATTCTGGAGGTGATCGCCGAGGAATTTGCC
AATGACTTCCCTGTGGAGACGCAGAAAGCCTGGGCCAAGCTGCGGGGTCTCATCTACAGCCACGTGACCG
CAGCCTACAAGGAAGTGGGCTGGGTACAGCAGGTCCCCAACACCACCACCCCACCAGCCACTCTGCCCTC
TTCAGGGCCGTAA

Translation (190 aa):
MEKVPGDMEIERRERSEELSEAERKAVQATWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFRHMEDPL
EMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPMYFKILSGVILEVIAEEFA
NDFPVETQKAWAKLRGLIYSHVTAAYKEVGWVQQVPNTTTPPATLPSSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH