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Report for CCDS3142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3142.1 Public Homo sapiens 3 TM4SF18 24 110 108 CCDS HistoryNCBI Gene:116441Re-query CCDS DB by CCDS ID:3142.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296059.7 ENSP00000296059.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296059.7Link to Ensembl Protein Viewer:ENSP00000296059.2Re-query CCDS DB by Nucleotide ID:ENST00000296059Re-query CCDS DB by Protein ID:ENSP00000296059
Original member Current member EBI ENST00000470080.5 ENSP00000419278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000470080.5Link to Ensembl Protein Viewer:ENSP00000419278.1Re-query CCDS DB by Nucleotide ID:ENST00000470080Re-query CCDS DB by Protein ID:ENSP00000419278
Original member Current member NCBI NM_001184723.2 NP_001171652.1 Accepted alive Link to Nucleotide Sequence:NM_001184723.2Link to Protein Sequence:NP_001171652.1Re-query CCDS DB by Nucleotide ID:NM_001184723Re-query CCDS DB by Protein ID:NP_001171652Link to BLAST:NP_001171652.1
Original member Current member NCBI NM_138786.4 NP_620141.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138786.4Link to Protein Sequence:NP_620141.1Re-query CCDS DB by Nucleotide ID:NM_138786Re-query CCDS DB by Protein ID:NP_620141Link to BLAST:NP_620141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171652.1 201 Q96CE8 201 100% 0 0
NP_620141.1 201 Q96CE8 201 100% 0 0

Chromosomal Locations for CCDS 3142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149321478 149321492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149322256 149322436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149324880 149325022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149330330 149330419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149333206 149333382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGGGTCTCGGAAGTGTGGAGGCTGCCTAAGTTGTTTGCTGATTCCGCTTGCACTTTGGAGTATAATCG
TGAACATATTATTGTATTTCCCGAATGGGCAAACTTCCTATGCATCCAGCAATAAACTCACCAACTACGT
GTGGTATTTTGAAGGAATCTGTTTCTCAGGCATCATGATGCTTATAGTAACAACAGTTCTTCTGGTACTG
GAGAATAATAACAACTATAAATGTTGCCAGAGTGAAAACTGCAGCAAAAAATATGTGACACTGCTGTCAA
TTATCTTTTCTTCCCTCGGAATTGCTTTTTCTGGATACTGCCTGGTCATCTCTGCCTTGGGTCTTGTCCA
AGGGCCATATTGCCGCACCCTTGATGGCTGGGAGTATGCTTTTGAAGGCACTGCTGGACGTTTCCTTACA
GATTCTAGCATATGGATTCAGTGCCTGGAACCTGCACATGTTGTGGAGTGGAACATCATTTTATTTTCCA
TTCTCATAACCCTCAGTGGGCTTCAAGTGATCATCTGCCTCATCAGAGTAGTCATGCAACTATCCAAGAT
ACTGTGTGGAAGCTATTCAGTGATCTTCCAGCCTGGAATCATTTGA

Translation (201 aa):
MGSRKCGGCLSCLLIPLALWSIIVNILLYFPNGQTSYASSNKLTNYVWYFEGICFSGIMMLIVTTVLLVL
ENNNNYKCCQSENCSKKYVTLLSIIFSSLGIAFSGYCLVISALGLVQGPYCRTLDGWEYAFEGTAGRFLT
DSSIWIQCLEPAHVVEWNIILFSILITLSGLQVIICLIRVVMQLSKILCGSYSVIFQPGII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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