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Report for CCDS6758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6758.1 Public Homo sapiens 9 GRIN3A 24 110 108 CCDS HistoryNCBI Gene:116443Re-query CCDS DB by CCDS ID:6758.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6758.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361820.6 ENSP00000355155.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361820.6Link to Ensembl Protein Viewer:ENSP00000355155.3Re-query CCDS DB by Nucleotide ID:ENST00000361820Re-query CCDS DB by Protein ID:ENSP00000355155
Original member Current member NCBI NM_133445.3 NP_597702.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133445.3Link to Protein Sequence:NP_597702.2Re-query CCDS DB by Nucleotide ID:NM_133445Re-query CCDS DB by Protein ID:NP_597702Link to BLAST:NP_597702.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_597702.2 1115 Q8TCU5 1115 100% 0 0

Chromosomal Locations for CCDS 6758.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 101573174 101573513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101577768 101577844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101579196 101579360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101613376 101613527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101623318 101623433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101628256 101628401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101670060 101671107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101686596 101687200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101737281 101737979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3348 nt):
ATGAGGAGACTGAGTTTGTGGTGGCTGCTGAGCAGGGTCTGTCTGCTGTTGCCGCCGCCCTGCGCACTGG
TGCTGGCCGGGGTGCCCAGCTCCTCCTCGCACCCGCAGCCCTGCCAGATCCTCAAGCGCATCGGGCACGC
GGTGAGGGTGGGCGCGGTGCACTTGCAGCCCTGGACCACCGCCCCCCGCGCGGCCAGCCGCGCTCCGGAC
GACAGCCGAGCAGGAGCCCAGAGGGATGAGCCGGAGCCAGGGACTAGGCGGTCCCCGGCGCCCTCGCCGG
GCGCACGCTGGTTGGGGAGCACCCTGCATGGCCGGGGGCCGCCGGGCTCCCGTAAGCCCGGGGAGGGCGC
CAGGGCGGAGGCCCTGTGGCCACGGGACGCCCTCCTATTTGCCGTGGACAACCTGAACCGCGTGGAAGGG
CTGCTACCCTACAACCTGTCTTTGGAAGTAGTGATGGCCATCGAGGCAGGCCTGGGCGATCTGCCACTTT
TGCCCTTCTCCTCCCCTAGTTCGCCATGGAGCAGTGACCCTTTCTCCTTCCTGCAAAGTGTGTGCCATAC
CGTGGTGGTGCAAGGGGTGTCGGCGCTGCTCGCCTTCCCCCAGAGCCAGGGCGAAATGATGGAGCTCGAC
TTGGTCAGCTTAGTCCTGCACATTCCAGTGATCAGCATCGTGCGCCACGAGTTTCCACGGGAGAGTCAGA
ATCCCCTTCACCTACAACTGAGTTTAGAAAATTCATTAAGTTCTGATGCTGATGTCACTGTCTCAATCCT
GACCATGAACAACTGGTACAATTTTAGCTTGTTGCTGTGCCAGGAAGACTGGAACATCACCGACTTCCTC
CTCCTTACCCAGAATAATTCCAAGTTCCACCTTGGTTCTATCATCAACATCACCGCTAACCTCCCCTCCA
CCCAGGACCTCTTGAGCTTCCTACAGATCCAGCTTGAGAGTATTAAGAACAGCACACCCACAGTGGTGAT
GTTTGGCTGCGACATGGAAAGTATCCGGCGGATTTTCGAAATTACAACCCAGTTTGGGGTCATGCCCCCT
GAACTTCGTTGGGTGCTGGGAGATTCCCAGAATGTGGAGGAACTGAGGACAGAGGGTCTGCCCTTAGGGC
TCATTGCTCATGGAAAAACAACACAGTCTGTCTTTGAGCACTACGTACAAGATGCTATGGAGCTGGTCGC
AAGAGCTGTAGCCACAGCCACCATGATCCAACCAGAACTTGCTCTCATTCCCAGCACGATGAACTGCATG
GAGGTGGAAACTACAAATCTCACTTCAGGACAATATTTATCAAGGTTTCTAGCCAATACCACTTTCAGAG
GCCTCAGTGGTTCCATCAGAGTAAAAGGTTCCACCATCGTCAGCTCAGAAAACAACTTTTTCATCTGGAA
TCTTCAACATGACCCCATGGGAAAGCCAATGTGGACCCGCTTGGGCAGCTGGCAGGGGGGAAAGATTGTC
ATGGACTATGGAATATGGCCAGAGCAGGCCCAGAGACACAAAACCCACTTCCAACATCCAAGTAAGCTAC
ACTTGAGAGTGGTTACCCTGATTGAGCATCCTTTTGTCTTCACAAGGGAGGTAGATGATGAAGGCTTGTG
CCCTGCTGGCCAACTCTGTCTAGACCCCATGACTAATGACTCTTCCACATTGGACAGCCTTTTTAGCAGC
CTCCATAGCAGTAATGATACAGTGCCCATTAAATTCAAGAAGTGCTGCTATGGATATTGCATTGATCTGC
TGGAAAAGATAGCAGAAGACATGAACTTTGACTTCGACCTCTATATTGTAGGGGATGGAAAGTATGGAGC
ATGGAAAAATGGGCACTGGACTGGGCTAGTGGGTGATCTCCTGAGAGGGACTGCCCACATGGCAGTCACT
TCCTTTAGCATCAATACTGCACGGAGCCAGGTGATAGATTTCACCAGCCCTTTCTTCTCCACCAGCTTGG
GCATCTTAGTGAGGACCCGAGATACAGCAGCTCCCATTGGAGCCTTCATGTGGCCACTCCACTGGACAAT
GTGGCTGGGGATTTTTGTGGCTCTGCACATCACTGCCGTCTTCCTCACTCTGTATGAATGGAAGAGTCCA
TTTGGTTTGACTCCCAAGGGGCGAAATAGAAGTAAAGTCTTCTCCTTTTCTTCAGCCTTGAACATCTGTT
ATGCCCTCTTGTTTGGCAGAACAGTGGCCATCAAACCTCCAAAATGTTGGACTGGAAGGTTTCTAATGAA
CCTTTGGGCCATTTTCTGTATGTTTTGCCTTTCCACATACACGGCAAACTTGGCTGCTGTCATGGTAGGT
GAGAAGATCTATGAAGAGCTTTCTGGAATACATGACCCCAAGTTACATCATCCTTCCCAAGGATTCCGCT
TTGGAACTGTCCGAGAAAGCAGTGCTGAAGATTATGTGAGACAAAGTTTCCCAGAGATGCATGAATATAT
GAGAAGGTACAATGTTCCAGCCACCCCTGATGGAGTGGAGTATCTGAAGAATGATCCAGAGAAACTAGAC
GCCTTCATCATGGACAAAGCCCTTCTGGATTATGAAGTGTCAATAGATGCTGACTGCAAACTTCTCACTG
TGGGGAAGCCATTTGCCATAGAAGGATACGGCATTGGCCTCCCACCCAACTCTCCATTGACCGCCAACAT
ATCCGAGCTAATCAGTCAATACAAGTCACATGGGTTTATGGATATGCTCCATGACAAGTGGTACAGGGTG
GTTCCCTGTGGCAAGAGAAGTTTTGCTGTCACGGAGACTTTGCAAATGGGCATCAAACACTTCTCTGGGC
TCTTTGTGCTGCTGTGCATTGGATTTGGTCTGTCCATTTTGACCACCATTGGTGAGCACATAGTATACAG
GCTGCTGCTACCACGAATCAAAAACAAATCCAAGCTGCAATACTGGCTCCACACCAGCCAGAGATTACAC
AGAGCAATAAATACATCATTTATAGAGGAAAAGCAGCAGCATTTCAAGACCAAACGTGTGGAAAAGAGGT
CTAATGTGGGACCCCGTCAGCTTACCGTATGGAATACTTCCAATCTGAGTCATGACAACCGACGGAAATA
CATCTTTAGTGATGAGGAAGGACAAAACCAGCTGGGCATCCGGATCCACCAGGACATCCCCCTCCCTCCA
AGGAGAAGAGAGCTCCCTGCCTTGCGGACCACCAATGGGAAAGCAGACTCCCTAAATGTATCTCGGAACT
CAGTGATGCAGGAACTCTCAGAGCTCGAGAAGCAGATTCAGGTGATCCGTCAGGAGCTGCAGCTGGCTGT
GAGCAGGAAAACGGAGCTGGAGGAGTATCAAAGGACAAGTCGGACTTGTGAGTCCTAG

Translation (1115 aa):
MRRLSLWWLLSRVCLLLPPPCALVLAGVPSSSSHPQPCQILKRIGHAVRVGAVHLQPWTTAPRAASRAPD
DSRAGAQRDEPEPGTRRSPAPSPGARWLGSTLHGRGPPGSRKPGEGARAEALWPRDALLFAVDNLNRVEG
LLPYNLSLEVVMAIEAGLGDLPLLPFSSPSSPWSSDPFSFLQSVCHTVVVQGVSALLAFPQSQGEMMELD
LVSLVLHIPVISIVRHEFPRESQNPLHLQLSLENSLSSDADVTVSILTMNNWYNFSLLLCQEDWNITDFL
LLTQNNSKFHLGSIINITANLPSTQDLLSFLQIQLESIKNSTPTVVMFGCDMESIRRIFEITTQFGVMPP
ELRWVLGDSQNVEELRTEGLPLGLIAHGKTTQSVFEHYVQDAMELVARAVATATMIQPELALIPSTMNCM
EVETTNLTSGQYLSRFLANTTFRGLSGSIRVKGSTIVSSENNFFIWNLQHDPMGKPMWTRLGSWQGGKIV
MDYGIWPEQAQRHKTHFQHPSKLHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSTLDSLFSS
LHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVT
SFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITAVFLTLYEWKSP
FGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVG
EKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVEYLKNDPEKLD
AFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRV
VPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWLHTSQRLH
RAINTSFIEEKQQHFKTKRVEKRSNVGPRQLTVWNTSNLSHDNRRKYIFSDEEGQNQLGIRIHQDIPLPP
RRRELPALRTTNGKADSLNVSRNSVMQELSELEKQIQVIRQELQLAVSRKTELEEYQRTSRTCES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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