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Report for CCDS38861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38861.1 Public Mus musculus 4 Ccdc30 23 108 98 CCDS HistoryNCBI Gene:73332Re-query CCDS DB by CCDS ID:38861.1Re-query CCDS DB by GeneID:73332See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238759.1 ENSMUSP00000158825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238759.1Link to Ensembl Protein Viewer:ENSMUSP00000158825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238759Re-query CCDS DB by Protein ID:ENSMUSP00000158825
Original member Current member NCBI NM_029286.2 NP_083562.1 Accepted alive Link to Nucleotide Sequence:NM_029286.2Link to Protein Sequence:NP_083562.1Re-query CCDS DB by Nucleotide ID:NM_029286Re-query CCDS DB by Protein ID:NP_083562Link to BLAST:NP_083562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083562.1 654 Q8BVF4-1 654 100% 0 0

Chromosomal Locations for CCDS 38861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119323998 119324193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119324541 119324608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119331123 119331237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119331482 119331618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119333580 119333721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119339761 119339873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119349730 119349874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119353070 119353224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119356638 119356847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119359558 119359737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119393542 119393657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119398168 119398239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119401000 119401150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119404074 119404238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGTGTCAAGAAGGCTTGTTCAGACTAGCTCTGAGCAGCCCCAGGAAACAGACTGCATGCTCACTGGGAG
AGAGGAGGACGCTGGCAGAGGCCCTGGGACTTGTGGACTCTACGCTGGAGTCTCGAAGAGATCCAAACAG
CAGCCTACAAAAAGAATTTCCCCAGCATCAGGATGAAGACCAGAGTAGAGCTGCAGCGCCTCAGGACTGC
CTCCTGAGGGATGTGGAGTGCATAGCACAGAAGCTGGAGGCCTCGCTGGAGGAGATCCACAGGGGAGCCC
GGGAGCCACGGGAGGAGAGAGAACAGAGAACGTTAGGTGATGCACTTGAGAATGCCCGACTGGAAATAGA
AAAACTGAAAGATAATCTGATGAAATTGAAAGAAAGTGGTACAACTGACCTACAGAGAGCAAGGGAGCAT
AACCAGAGGCTGGACGAGGAAATTCTGGCATTAAGAAACCGGGTTCGATCACTTGACTCGGAGAAAAAGG
TGCTTGGAGAAATGTATCTAACATCTGGAGAGAAAACAAGCTGCCAGCACCAAGGGGAACTGCGGGAACT
GCGGCAGAACCTGCGCCGCCTGCAGATCCTGTGCAACTCGGCTGAGAAGGAGCTGCGGTACGAGCGGGGC
CGGAGCCTGGACTTGAAACAACATAACAGTTTGCTCCAGGAGGAGAACATCAAGATCAAAATTGAACTCA
AGCAGGCCCAGGAGAAGTTGCTGGACAACGCCAGGCTGCACTCCTCGCTCACTGCGGAGTGGAAGCACTG
TCAGCAGAAAGTCAAGGAGCTCGAGCTGGAGGGGCTTAGGCAGACGCAGAGCCTTAAATCCCAGCAGGGC
CTACAGGAAAAGCTGGCGCGGGAGAAATCCAAAGCAGCAGAAGCACAGGAAAAGATTTTGGACCTGCAGC
AAAAGCTAGACCACGGAAGACAAGTCTGCCTCTCAGATGTTTGCATTTTGCGTAAGAAGCAACTTGAGGA
AGAGATTAAGGAAGCAAAGAGCATCGAGGCCAGGCTGCAGCAGCAGTGCCAGGAGGAGCAGCAGAGGAGG
ATCCTCCTAGACCAGGACATAAATGAGCTCCAGACACAAGTGAGAGCCTTGCAGGATAAGGAGGAACAAC
AGGAAGCAGTCAATTCCCAGCAACAAGAGGCCCTACGAAAACAACTGGAGAGGGAGAGGAGAAAGTGTGA
AGAGTATGTCAAGAGCAACCAGGAATTGTCAGAGAAACTATCTAACTTGCAGCAAGAAAAGGAAGCTCTA
TGGCAAGAACACGGGCGGTTTTTGGAGCAACTTGGTGATCATGTGAGAAACTACAAAGACAAACACCACT
GTCACAAAGCCAAGCTTCAAAAGGTCAAGGACCGTCTAACTCACGAGCTAGAGATACGGAATAAGAGGAT
TAAAGAACTTGAAGATGAAACTGGAAAACTGCAACAGAAAATTGAAATGGAGAAAGTGTTCCAGGGTCAG
ATCATGGCCCAGAATGACATCCTCCTCCTGGAAAAGAGGAAGCTTCTGGAACAAGTCACAGATCAAGAAG
AACTGATTTGCAGCAGCAAGTGCACGATATCTGCCTTCCAGAGCAAGGCGTCTTTACTGGATAAAGAAAA
CCAGCAGTTGCAGGAGAACTGCCTCCGGCTCATGCAGCAAATTGGCCTCTTGGAACAAATTATAAGGAGC
ATCCAGATTCGCAGAGAAGAGGAAACAGTAATTACTGACAACGCTGCATTTGAAATACTCAAAAAGATAC
TACCTTTACAAAACTCCAGTTTCTCAGGGACAGGCTTCGTATTGTCAGCTGAAAATCTCCAGGAGACTGA
GCTGCACAAATGGGAAGGCGCAGCAGCAATCCCCAAGTCCCCCGAGCCTCTTTCACGTTCACAGGATTCA
GAAAGTGGATATATAAATGTGACTTCTCTAAAAGAGACACACAACACACAAGGGGACCAAAAGCCAGAAC
TATGA

Translation (654 aa):
MCQEGLFRLALSSPRKQTACSLGERRTLAEALGLVDSTLESRRDPNSSLQKEFPQHQDEDQSRAAAPQDC
LLRDVECIAQKLEASLEEIHRGAREPREEREQRTLGDALENARLEIEKLKDNLMKLKESGTTDLQRAREH
NQRLDEEILALRNRVRSLDSEKKVLGEMYLTSGEKTSCQHQGELRELRQNLRRLQILCNSAEKELRYERG
RSLDLKQHNSLLQEENIKIKIELKQAQEKLLDNARLHSSLTAEWKHCQQKVKELELEGLRQTQSLKSQQG
LQEKLAREKSKAAEAQEKILDLQQKLDHGRQVCLSDVCILRKKQLEEEIKEAKSIEARLQQQCQEEQQRR
ILLDQDINELQTQVRALQDKEEQQEAVNSQQQEALRKQLERERRKCEEYVKSNQELSEKLSNLQQEKEAL
WQEHGRFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTHELEIRNKRIKELEDETGKLQQKIEMEKVFQGQ
IMAQNDILLLEKRKLLEQVTDQEELICSSKCTISAFQSKASLLDKENQQLQENCLRLMQQIGLLEQIIRS
IQIRREEETVITDNAAFEILKKILPLQNSSFSGTGFVLSAENLQETELHKWEGAAAIPKSPEPLSRSQDS
ESGYINVTSLKETHNTQGDQKPEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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