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Report for CCDS37102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37102.1 Public Mus musculus 15 Arc 23 108 98 CCDS HistoryNCBI Gene:11838Re-query CCDS DB by CCDS ID:37102.1See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37102.1
This CCDS ID represents the protein described in PMIDs: 10727859 and 22036569. This protein is encoded by two splice variants which are supported by AK157822.1 and AF162777.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 22036569. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 37102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023268.13 ENSMUSP00000023268.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023268.13Link to Ensembl Protein Viewer:ENSMUSP00000023268.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023268Re-query CCDS DB by Protein ID:ENSMUSP00000023268
Original member Current member EBI ENSMUST00000110009.3 ENSMUSP00000105636.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110009.3Link to Ensembl Protein Viewer:ENSMUSP00000105636.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110009Re-query CCDS DB by Protein ID:ENSMUSP00000105636
Original member Current member NCBI NM_001276684.1 NP_001263613.1 Accepted alive Link to Nucleotide Sequence:NM_001276684.1Link to Protein Sequence:NP_001263613.1Re-query CCDS DB by Nucleotide ID:NM_001276684Re-query CCDS DB by Protein ID:NP_001263613Link to BLAST:NP_001263613.1
Original member Current member NCBI NM_018790.3 NP_061260.1 Accepted alive Link to Nucleotide Sequence:NM_018790.3Link to Protein Sequence:NP_061260.1Re-query CCDS DB by Nucleotide ID:NM_018790Re-query CCDS DB by Protein ID:NP_061260Link to BLAST:NP_061260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263613.1 396 Q9WV31 396 100% 0 0
NP_061260.1 396 Q9WV31 396 100% 0 0

Chromosomal Locations for CCDS 37102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74671182 74672372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGAGCTGGACCATATGACCACCGGCGGCCTCCACGCCTACCCTGCCCCGCGGGGTGGGCCGGCCGCCA
AACCCAATGTGATCCTGCAGATTGGTAAGTGCCGAGCTGAGATGCTGGAACACGTACGGAGGACCCACCG
GCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGAGCTGAAAGGGTTGCACAGGTCGGTGGGCAAG
CTGGAGAACAACTTGGACGGCTACGTGCCCACCGGCGACTCACAGCGCTGGAAGAAGTCCATCAAGGCCT
GTCTTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGTCAAGCGTGAGATGCACGTGTGGAG
GGAGGTCTTCTACCGTCTGGAGAGGTGGGCTGACCGCCTGGAGTCCATGGGCGGCAAATACCCAGTGGGC
AGCGAGCCGGCCCGCCACACTGTCTCTGTAGGTGTGGGGGGTCCAGAGCCCTACTGCCAGGAAGCTGATG
GCTATGACTATACCGTTAGCCCCTATGCCATCACCCCGCCACCTGCCGCAGGAGAACTGCCTGAACAGGA
GTCAGTTGAGGCTCAGCAATATCAGTCTTGGGGGCCAGGTGAGGATGGGCAACCGAGCCCTGGTGTGGAT
ACACAGATCTTCGAGGACCCACGGGAGTTCCTGAGCCACCTGGAAGAGTACCTGCGGCAGGTGGGTGGCT
CTGAAGAATATTGGCTGTCCCAGATCCAGAACCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGTTCAA
GCAGGGCTCGGTGAAGAACTGGGTGGAGTTCAAGAAGGAGTTTCTGCAATACAGTGAGGGTACACTCTCC
CGTGAAGCCATTCAGCGGGAGCTGGAGCTGCCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTCTGGC
GCAAGCGGGACCTGTACCAGACACTGTATGTGGACGCTGAGGAGGAGGAGATCATTCAGTATGTGGTGGG
CACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAG
AGGGGTATGGAAGTGCAGGACGGCCTGGAGCAGGCAGCTGAGCCTTCTGGCACCCCACTGCCCACAGAGG
ATGAGACGGAGGCACTCACACCTGCTCTTACCAGCGAGTCAGTAGCCAGTGACAGGACCCAGCCTGAATA
G

Translation (396 aa):
MELDHMTTGGLHAYPAPRGGPAAKPNVILQIGKCRAEMLEHVRRTHRHLLTEVSKQVERELKGLHRSVGK
LENNLDGYVPTGDSQRWKKSIKACLCRCQETIANLERWVKREMHVWREVFYRLERWADRLESMGGKYPVG
SEPARHTVSVGVGGPEPYCQEADGYDYTVSPYAITPPPAAGELPEQESVEAQQYQSWGPGEDGQPSPGVD
TQIFEDPREFLSHLEEYLRQVGGSEEYWLSQIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEGTLS
REAIQRELELPQKQGEPLDQFLWRKRDLYQTLYVDAEEEEIIQYVVGTLQPKLKRFLRHPLPKTLEQLIQ
RGMEVQDGLEQAAEPSGTPLPTEDETEALTPALTSESVASDRTQPE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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