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Report for CCDS94172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94172.1 Public Homo sapiens 7 SRPK2 24 110 108 CCDS HistoryNCBI Gene:6733Re-query CCDS DB by CCDS ID:94172.1Re-query CCDS DB by GeneID:6733See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000482862.2 ENSP00000516319.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482862.2Link to Ensembl Protein Viewer:ENSP00000516319.1Re-query CCDS DB by Nucleotide ID:ENST00000482862Re-query CCDS DB by Protein ID:ENSP00000516319
Original member Current member NCBI NM_001350742.2 NP_001337671.1 Accepted alive Link to Nucleotide Sequence:NM_001350742.2Link to Protein Sequence:NP_001337671.1Re-query CCDS DB by Nucleotide ID:NM_001350742Re-query CCDS DB by Protein ID:NP_001337671Link to BLAST:NP_001337671.1

Chromosomal Locations for CCDS 94172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105117838 105118022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105126248 105126340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105126993 105127062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105132791 105132898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105133004 105133104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105142008 105142490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105143084 105143330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105145283 105145308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105146493 105146658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105160507 105160613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105167377 105167464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105168008 105168095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105169157 105169265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105203628 105203785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105268806 105268869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105388648 105388702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105389244 105389273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGAGCAGCGGGCGGCGCGACCGGCCGGGTGCTGGCCATTCAGGCCCGAAAGCGGAGGCCGAAAAGAGA
GAAACATCCGAAAAAAAATCAAGCAGAAGATTGAGCTGCTGATGTCAGTTAACTCTGAGAAGTCGTCCTC
TTCAGAAAGGCCGGAGCCTCAACAGAAAGCTCCTTTAGTTCCTCCTCCTCCACCGCCACCACCACCACCA
CCGCCACCTTTGCCAGACCCCACACCCCCGGAGCCAGAGGAGGAGATCCTGGGATCAGATGATGAGGAGC
AAGAGGACCCTGCGGACTACTGCAAAGGTGGATATCATCCAGTGAAAATTGGAGACCTCTTCAATGGCCG
GTATCATGTTATTAGAAAGCTTGGATGGGGGCACTTCTCTACTGTCTGGCTGTGCTGGGATATGCAGGGG
AAAAGATTTGTTGCAATGAAAGTTGTAAAAAGTGCCCAGCATTATACGGAGACAGCCTTGGATGAAATAA
AATTGCTCAAATGTGTTCGAGAAAGTGATCCCAGTGACCCAAACAAAGACATGGTGGTCCAGCTCATTGA
CGACTTCAAGATTTCAGGCATGAATGGGATACATGTCTGCATGGTCTTCGAAGTACTTGGCCACCATCTC
CTCAAGTGGATCATCAAATCCAACTATCAAGGCCTCCCAGTACGTTGTGTGAAGAGTATCATTCGACAGG
TCCTTCAAGGGTTAGATTACTTACACAGTAAGTGCAAGATCATTCATACTGACATAAAGCCGGAAAATAT
CTTGATGTGTGTGGATGATGCATATGTGAGAAGAATGGCAGCTGAGGCCACTGAGTGGCAGAAAGCAGGT
GCTCCTCCTCCTTCAGGGTCTGCAGTGAGTACGGCTCCACAGCAGAAACCTATAGGAAAAATATCTAAAA
ACAAAAAGAAAAAACTGAAAAAGAAACAGAAGAGGCAGGCTGAGTTATTGGAGAAGCGCCTGCAGGAGAT
AGAAGAATTGGAGCGAGAAGCTGAAAGGAAAATAATAGAAGAAAACATCACCTCAGCTGCACCTTCCAAT
GACCAGGATGGCGAATACTGCCCAGAGGTGAAACTAAAAACAACAGGATTAGAGGAGGCGGCTGAGGCAG
AGACTGCAAAGGACAATGGTGAAGCTGAGGACCAGGAAGAGAAAGAAGATGCTGAGAAAGAAAACATTGA
AAAAGATGAAGATGATGTAGATCAGGAACTTGCGAACATAGACCCTACGTGGATAGAATCACCTAAAACC
AATGGCCATATTGAGAATGGCCCATTCTCACTGGAGCAGCAACTGGACGATGAAGATGATGATGAAGAAG
ACTGCCCAAATCCTGAGGAATATAATCTTGATGAGCCAAATGCAGAAAGTGATTACACATATAGCAGCTC
CTATGAACAATTCAATGGTGAATTGCCAAATGGACGACATAAAATTCCCGAGTCACAGTTCCCAGAGTTT
TCCACCTCGTTGTTCTCTGGATCCTTAGAACCTGTGGCCTGCGGCTCTGTGCTTTCTGAGGGATCACCAC
TTACTGAGCAAGAGGAGAGCAGTCCATCCCATGACAGAAGCAGAACGGTTTCAGCCTCCAGTACTGGGGA
TTTGCCAAAAGCAAAAACCCGGGCAGCTGACTTGTTGGTGAATCCCCTGGATCCGCGGAATGCAGATAAA
ATTAGAGTAAAAATTGCTGACCTGGGAAATGCTTGTTGGGTGCATAAACACTTCACGGAAGACATCCAGA
CGCGTCAGTACCGCTCCATAGAGGTTTTAATAGGAGCGGGGTACAGCACCCCTGCGGACATCTGGAGCAC
GGCGTGTATGGCATTTGAGCTGGCAACGGGAGATTATTTGTTTGAACCACATTCTGGGGAAGACTATTCC
AGAGACGAAGACCACATAGCCCACATCATAGAGCTGCTAGGCAGTATTCCAAGGCACTTTGCTCTATCTG
GAAAATATTCTCGGGAATTCTTCAATCGCAGAGGAGAACTGCGACACATCACCAAGCTGAAGCCCTGGAG
CCTCTTTGATGTACTTGTGGAAAAGTATGGCTGGCCCCATGAAGATGCTGCACAGTTTACAGATTTCCTG
ATCCCGATGTTAGAAATGGTTCCAGAAAAACGAGCCTCAGCTGGCGAATGCCTTCGGCATCCTTGGTTGA
ATTCTTAG

Translation (725 aa):
MEQRAARPAGCWPFRPESGGRKERNIRKKIKQKIELLMSVNSEKSSSSERPEPQQKAPLVPPPPPPPPPP
PPPLPDPTPPEPEEEILGSDDEEQEDPADYCKGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQG
KRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHL
LKWIIKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATEWQKAG
APPPSGSAVSTAPQQKPIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAERKIIEENITSAAPSN
DQDGEYCPEVKLKTTGLEEAAEAETAKDNGEAEDQEEKEDAEKENIEKDEDDVDQELANIDPTWIESPKT
NGHIENGPFSLEQQLDDEDDDEEDCPNPEEYNLDEPNAESDYTYSSSYEQFNGELPNGRHKIPESQFPEF
STSLFSGSLEPVACGSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLPKAKTRAADLLVNPLDPRNADK
IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYLFEPHSGEDYS
RDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFL
IPMLEMVPEKRASAGECLRHPWLNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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