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Report for CCDS26007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26007.1 Public Mus musculus 12 Arg2 23 108 98 CCDS HistoryNCBI Gene:11847Re-query CCDS DB by CCDS ID:26007.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021550.6 ENSMUSP00000021550.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021550.6Link to Ensembl Protein Viewer:ENSMUSP00000021550.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021550Re-query CCDS DB by Protein ID:ENSMUSP00000021550
Original member Current member NCBI NM_009705.3 NP_033835.1 Accepted alive Link to Nucleotide Sequence:NM_009705.3Link to Protein Sequence:NP_033835.1Re-query CCDS DB by Nucleotide ID:NM_009705Re-query CCDS DB by Protein ID:NP_033835Link to BLAST:NP_033835.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033835.1 354 O08691 354 100% 0 0

Chromosomal Locations for CCDS 26007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79130870 79130980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79131841 79131913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79147588 79147765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79149869 79150028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79150732 79150826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79150953 79151057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79151922 79152058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79155826 79156031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGTTCCTGAGGAGCAGCGCCTCCCGTCTCCTCCACGGGCAAATTCCTTGCGTCCTGACGAGATCCGTCC
ACTCTGTAGCTATAGTCGGAGCCCCTTTCTCTCGGGGACAGAAGAAGCTAGGAGTGGAATATGGTCCAGC
TGCCATTCGAGAAGCTGGCTTGCTGAAGAGGCTCTCCAGGTTGGGATGCCACCTAAAAGACTTTGGAGAC
TTGAGTTTTACTAATGTCCCACAAGATGATCCCTACAATAATCTGGTTGTGTATCCTCGTTCAGTGGGCC
TTGCCAACCAGGAACTGGCTGAAGTGGTTAGTAGAGCTGTGTCAGGTGGCTACAGCTGTGTCACCATGGG
AGGAGACCACAGCCTGGCAATAGGTACCATTATCGGTCACGCCCGGCACCGCCCAGATCTCTGTGTCATC
TGGGTTGATGCTCATGCGGACATTAATACACCTCTCACCACTGTATCTGGAAATATACATGGACAGCCAC
TTTCCTTTCTCATCAAAGAACTACAAGACAAGGTACCACAACTGCCAGGATTTTCCTGGATCAAACCTTG
CCTCTCTCCCCCAAATATTGTGTACATTGGCCTGAGAGATGTGGAGCCTCCTGAACATTTTATTTTAAAG
AATTATGACATCCAGTATTTTTCCATGAGAGAGATTGATCGACTTGGGATCCAGAAGGTGATGGAACAGA
CATTTGATCGGCTGATTGGCAAAAGGCAGAGGCCAATCCACCTGAGTTTTGACATTGATGCATTTGACCC
TAAACTGGCTCCAGCCACAGGAACCCCTGTTGTAGGGGGATTAACCTACAGAGAAGGAGTGTATATTACT
GAAGAAATACATAATACAGGGTTGCTGTCAGCTCTGGATCTTGTTGAAGTCAATCCTCATTTGGCCACTT
CTGAGGAAGAGGCCAAGGCAACAGCCAGACTAGCAGTGGATGTGATTGCTTCAAGTTTTGGTCAGACAAG
AGAAGGAGGACACATTGTCTATGACCACCTTCCTACTCCTAGTTCACCACACGAATCAGAAAATGAAGAA
TGTGTGAGAATTTAG

Translation (354 aa):
MFLRSSASRLLHGQIPCVLTRSVHSVAIVGAPFSRGQKKLGVEYGPAAIREAGLLKRLSRLGCHLKDFGD
LSFTNVPQDDPYNNLVVYPRSVGLANQELAEVVSRAVSGGYSCVTMGGDHSLAIGTIIGHARHRPDLCVI
WVDAHADINTPLTTVSGNIHGQPLSFLIKELQDKVPQLPGFSWIKPCLSPPNIVYIGLRDVEPPEHFILK
NYDIQYFSMREIDRLGIQKVMEQTFDRLIGKRQRPIHLSFDIDAFDPKLAPATGTPVVGGLTYREGVYIT
EEIHNTGLLSALDLVEVNPHLATSEEEAKATARLAVDVIASSFGQTREGGHIVYDHLPTPSSPHESENEE
CVRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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