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Report for CCDS24898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24898.1 Public Mus musculus 11 Atp1b2 23 108 98 CCDS HistoryNCBI Gene:11932Re-query CCDS DB by CCDS ID:24898.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047889.12 ENSMUSP00000047353.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047889.12Link to Ensembl Protein Viewer:ENSMUSP00000047353.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047889Re-query CCDS DB by Protein ID:ENSMUSP00000047353
Original member Current member NCBI NM_013415.6 NP_038201.1 Accepted alive Link to Nucleotide Sequence:NM_013415.6Link to Protein Sequence:NP_038201.1Re-query CCDS DB by Nucleotide ID:NM_013415Re-query CCDS DB by Protein ID:NP_038201Link to BLAST:NP_038201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038201.1 290 P14231 290 100% 0 0

Chromosomal Locations for CCDS 24898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69601248 69601412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69601525 69601623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69602425 69602481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69602700 69602905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69603007 69603111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69603425 69603553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69605261 69605372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGTCATCCAGAAAGAGAAGAAGAGCTGCGGGCAGGTGGTTGAGGAGTGGAAGGAGTTCGTGTGGAACC
CGCGGACGCACCAGTTCATGGGGCGCACCGGGACCAGCTGGGCCTTCATCCTCCTCTTCTACCTCGTCTT
CTATGGTTTCCTCACGGCCATGTTCAGCCTCACCATGTGGGTAATGCTGCAGACCGTCTCTGACCATACC
CCCAAGTACCAGGATCGACTGGCCACACCAGGCTTGATGATTCGACCCAAGACTGAGAACCTTGATGTCA
TTGTCAACATTAGTGACACTGAAAGCTGGGGTCAGCATGTTCAGAAGCTCAACAAGTTCTTGGAACCTTA
CAACGACTCCATCCAAGCACAGAAGAATGATGTCTGCCGTCCAGGGCGATATTATGAGCAACCTGATAAT
GGGGTTCTGAACTACCCAAAACGTGCCTGCCAGTTCAACCGGACCCAACTGGGCGATTGCTCTGGCATTG
GGGACCCTACCCACTATGGTTACAGCACCGGGCAGCCCTGTGTCTTCATCAAAATGAATCGGGTCATCAA
CTTCTATGCAGGGGCAAACCAGAGCATGAATGTCACTTGTGTTGGCAAGAGAGATGAAGATGCTGAGAAC
CTTGGCCACTTTGTCATGTTCCCTGCTAATGGCAGCATTGATCTGATGTACTTTCCCTACTATGGCAAAA
AGTTCCATGTAAACTATACTCAGCCTTTGGTGGCTGTAAAGTTCCTGAATGTGACCCCCAACGTGGAGGT
GAATGTTGAATGCCGCATCAACGCTGCCAATATTGCCACAGACGATGAGCGGGACAAGTTCGCTGGCCGT
GTGGCCTTCAAACTCCGGATCAACAAAACCTGA

Translation (290 aa):
MVIQKEKKSCGQVVEEWKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFSLTMWVMLQTVSDHT
PKYQDRLATPGLMIRPKTENLDVIVNISDTESWGQHVQKLNKFLEPYNDSIQAQKNDVCRPGRYYEQPDN
GVLNYPKRACQFNRTQLGDCSGIGDPTHYGYSTGQPCVFIKMNRVINFYAGANQSMNVTCVGKRDEDAEN
LGHFVMFPANGSIDLMYFPYYGKKFHVNYTQPLVAVKFLNVTPNVEVNVECRINAANIATDDERDKFAGR
VAFKLRINKT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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