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Report for CCDS23348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23348.1 Public Mus musculus 9 Bmp5 23 108 98 CCDS HistoryNCBI Gene:12160Re-query CCDS DB by CCDS ID:23348.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012281.7 ENSMUSP00000012281.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012281.7Link to Ensembl Protein Viewer:ENSMUSP00000012281.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000012281Re-query CCDS DB by Protein ID:ENSMUSP00000012281
Original member Current member NCBI NM_007555.4 NP_031581.2 Accepted alive Link to Nucleotide Sequence:NM_007555.4Link to Protein Sequence:NP_031581.2Re-query CCDS DB by Nucleotide ID:NM_007555Re-query CCDS DB by Protein ID:NP_031581Link to BLAST:NP_031581.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031581.2 454 P49003-2 454 100% 0 0

Chromosomal Locations for CCDS 23348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 75776093 75776582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75828018 75828210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75839545 75839693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75873255 75873449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75886638 75886714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75893694 75893804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75898433 75898582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGCATTGGACTGTATTTTTACTTAGGGGTATTGTGGGCTTCCTCTGGAGCGGCTGGGTTCAAGTGGGTT
ATGCAAAAGGAGGCTTGGGAGACAATCACGTTCACTCCAGTTTTATTTATAGAAGGCTACGGAACCATGA
GAGACGGGAAATACAGAGGGAAATTCTGTCTATTTTGGGTTTGCCTCACAGACCCAGGCCCTTTTCACCA
GGGAAACAAGCATCTTCTGCCCCCCTCTTTATGCTGGATCTCTACAATGCCATGGCTAGCGAAGACAACC
CTGAGGAGTCGGAGTATTTGGTGAGGGTGTCCCTGGCTGGAGAGGCCAAAGAGACAAGAAAGGGATACCC
AGCCTCTCCCAATGGGTATGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGACTACCCAGAGCCCA
CCTCTTGCCAGCCTACATGATACCAACTTTCTGAATGATGCTGACATGGTCATGAGCTTTGTCAACTTAG
TTGAAAGAGACAAGGACTTTTCTCATCAGAGGAGGCATTACAAAGAGTTTCGGTTTGATCTGACCCAGAT
TCCACATGGAGAAGCAGTGACAGCAGCAGAATTCCGGATTTATAAGGACAAGGGAAACCATCGATTTGAA
AATGAAACAATTAAGATCAGCATATATCAGATCATCAAGGAATACACAAACAGGGATGCAGATCTTTTTC
TGCTAGATACGAGGAAGACACAAGCTTTAGATGTGGGCTGGCTTGTCTTTGATATCACTGTGACCAGCAA
CCACTGGGTGATTAATCCACAGAACAATTTGGGCTTACAGCTCTGTGCAGAGACGGGGGATGGCCGCAGC
ATCAATGTAAAATCTGCTGGTCTTGTGGGAAGACATGGGCCTCAGTCAAAACAGCCATTCATGGTGGCCT
TCTTCAAGGCAAGCGAGGTACTTCTTCGATCCGTGAGAGCAGCCAGCAAACGGAAAAATCAAAACCGCAA
TAAATCCAACTCTCATCAGGACCCCTCCAGGATGCCCAGTGCTGGAGATTATAATACCAGTGAACAAAAA
CAAGCCTGCAAGAAGCACGAACTCTATGTGAGTTTCCGAGATCTGGGATGGCAGGACTGGATCATAGCAC
CAGAAGGGTATGCTGCATTTTATTGTGACGGGGAATGTTCTTTTCCACTTAATGCCCATATGAATGCCAC
CAACCATGCCATAGTCCAGACCCTGGTACACCTGATGTTTCCAGACCATGTTCCCAAGCCTTGCTGCGCT
CCAACCAAACTAAATGCCATCTCGGTCCTGTATTTTGATGACAGCTCCAATGTCATTTTGAAAAAGTACA
GAAATATGGTAGTACGTTCGTGTGGCTGCCACTAG

Translation (454 aa):
MHWTVFLLRGIVGFLWSGWVQVGYAKGGLGDNHVHSSFIYRRLRNHERREIQREILSILGLPHRPRPFSP
GKQASSAPLFMLDLYNAMASEDNPEESEYLVRVSLAGEAKETRKGYPASPNGYAHRLHLPPRTPLTTQSP
PLASLHDTNFLNDADMVMSFVNLVERDKDFSHQRRHYKEFRFDLTQIPHGEAVTAAEFRIYKDKGNHRFE
NETIKISIYQIIKEYTNRDADLFLLDTRKTQALDVGWLVFDITVTSNHWVINPQNNLGLQLCAETGDGRS
INVKSAGLVGRHGPQSKQPFMVAFFKASEVLLRSVRAASKRKNQNRNKSNSHQDPSRMPSAGDYNTSEQK
QACKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQTLVHLMFPDHVPKPCCA
PTKLNAISVLYFDDSSNVILKKYRNMVVRSCGCH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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