NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19264.1 Public Mus musculus 5 Bst1 23 108 98 CCDS HistoryNCBI Gene:12182Re-query CCDS DB by CCDS ID:19264.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19264.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101237.7 ENSMUSP00000098796.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101237.7Link to Ensembl Protein Viewer:ENSMUSP00000098796.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101237Re-query CCDS DB by Protein ID:ENSMUSP00000098796
Original member Current member NCBI NM_009763.3 NP_033893.2 Accepted alive Link to Nucleotide Sequence:NM_009763.3Link to Protein Sequence:NP_033893.2Re-query CCDS DB by Nucleotide ID:NM_009763Re-query CCDS DB by Protein ID:NP_033893Link to BLAST:NP_033893.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033893.2 311 Q64277 311 99.6785% 0 1

Chromosomal Locations for CCDS 19264.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43818927 43819093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43820478 43820604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43821610 43821745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43822267 43822349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43825328 43825404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43826264 43826356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43837461 43837547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43840431 43840490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43841997 43842102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCTGTCCAGGGAGGCCTGTTGTCTCTGTGGCTGTGGCTATGGCTGTCCTTGCTGACAGTGCTTCTGG
GGGCAAGAGCGCGGTGGACAGGGGAGGGTACCACTCCTCACCTCCAGAGCATCTTCCTGGGCCGCTGCGC
AGAGTACACCACGCTGCTGAGCCTGGGGAACAAAAACTGCACAGCCATCTGGGAGGCCTTCAAGGGGGTG
CTGGACAAGGACCCCTGCTCTGTGCTCCCCTCAGACTATGATCTCTTCATTAACCTCTCCAGGCACCCCA
TTCCTAGGGACAAGTCACTGTTCTGGGAGAATAACCACCTGCTCGTTATGAGCTATGGGGAGAACACCCG
CCGCCTCGTGGCCCTGTGCGACGTGCTGTATGGCAAAGTTGGCGATTTCTTGAGCTGGTGTCGACAGGAA
AATGCCTCTGGACTTGACTACCAGTCCTGCCCCACATCAGAAGACTGTGAAAACAACGCCGTGGACTCCT
ATTGGAAAAGTGCATCCATGCAGTATTCAAGAGACAGTTCAGGGGTGATCAACGTCATGCTGAATGGCTC
GGAGCCAAAAGGAGCCTATCCCACGAGAGGGTTTTTTGCAGATTTTGAAATCCCGTACTTACAAAAGGAT
AAAGTCACAAGAATAGAGATCTGGGTTATGCATGACGTTGGAGGGCCCAATGTGGAATCCTGTGGCGAAG
GCAGTGTGAAAATCCTGGAAGACAGATTGGAGGCCCTGGGGTTCCAGCACAGCTGTATCAATGACTACCG
ACCAGTGAAGTTCTTAATGTGTGTGGACCACAGCACTCACCCCGACTGTATCATGAACTCAGCCTCAGCA
TCTATGCGGAGGGAGAGCGCATCTCTTCATGCAATAGGAGACGCCAGCCTTCTCATTTCTCTCTTAGTAG
CTTTGGCTTCAAGTTCTCAGGCGTGA

Translation (311 aa):
MAVQGGLLSLWLWLWLSLLTVLLGARARWTGEGTTPHLQSIFLGRCAEYTTLLSLGNKNCTAIWEAFKGV
LDKDPCSVLPSDYDLFINLSRHPIPRDKSLFWENNHLLVMSYGENTRRLVALCDVLYGKVGDFLSWCRQE
NASGLDYQSCPTSEDCENNAVDSYWKSASMQYSRDSSGVINVMLNGSEPKGAYPTRGFFADFEIPYLQKD
KVTRIEIWVMHDVGGPNVESCGEGSVKILEDRLEALGFQHSCINDYRPVKFLMCVDHSTHPDCIMNSASA
SMRRESASLHAIGDASLLISLLVALASSSQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH