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Report for CCDS22479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22479.1 Public Mus musculus 8 Calr 23 108 98 CCDS HistoryNCBI Gene:12317Re-query CCDS DB by CCDS ID:22479.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003912.6 ENSMUSP00000003912.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003912.6Link to Ensembl Protein Viewer:ENSMUSP00000003912.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003912Re-query CCDS DB by Protein ID:ENSMUSP00000003912
Original member Current member NCBI NM_007591.3 NP_031617.1 Accepted alive Link to Nucleotide Sequence:NM_007591.3Link to Protein Sequence:NP_031617.1Re-query CCDS DB by Nucleotide ID:NM_007591Re-query CCDS DB by Protein ID:NP_031617Link to BLAST:NP_031617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031617.1 416 P14211 416 100% 0 0

Chromosomal Locations for CCDS 22479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84842647 84842844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84842944 84843036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84844065 84844208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84844378 84844491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84844574 84844783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84844871 84844965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84845862 84846065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84846250 84846351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84846708 84846798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGCTCCTTTCGGTGCCGCTCCTGCTTGGCCTCCTCGGCCTGGCCGCCGCAGACCCTGCCATCTATTTCA
AAGAGCAGTTCTTGGACGGAGATGCCTGGACCAACCGCTGGGTCGAATCCAAACATAAGTCCGATTTTGG
CAAATTTGTCCTCAGTTCTGGCAAATTTTACGGGGACCTGGAGAAGGATAAAGGGCTGCAGACAAGCCAA
GATGCCCGATTTTACGCACTGTCCGCCAAATTCGAACCCTTCAGCAATAAGGGCCAGACACTGGTGGTAC
AGTTCACGGTGAAGCATGAGCAGAATATCGACTGTGGGGGCGGCTACGTGAAGCTGTTTCCGAGTGGTTT
GGACCAGAAGGACATGCATGGAGACTCAGAATATAACATCATGTTTGGTCCGGACATCTGCGGTCCTGGC
ACCAAGAAGGTTCATGTCATCTTTAACTACAAGGGCAAGAATGTGCTGATCAACAAGGATATCCGGTGTA
AGGATGATGAATTCACACACCTATACACACTGATTGTGCGGCCAGACAACACCTATGAGGTGAAAATTGA
CAACAGCCAGGTGGAGTCAGGCTCCTTGGAGGATGATTGGGACTTTCTGCCACCCAAGAAGATAAAGGAC
CCTGATGCTGCCAAGCCGGAAGACTGGGATGAACGAGCCAAGATCGATGACCCCACAGATTCCAAGCCTG
AGGACTGGGACAAGCCAGAGCACATCCCTGACCCTGATGCTAAGAAGCCTGAGGACTGGGATGAAGAGAT
GGATGGAGAGTGGGAACCACCAGTGATTCAAAATCCTGAATACAAGGGCGAGTGGAAACCACGTCAAATT
GACAACCCAGATTACAAGGGTACCTGGATACACCCAGAAATTGACAACCCTGAATACTCCCCCGATGCAA
ATATCTATGCCTATGATAGTTTTGCTGTACTGGGCCTAGATCTCTGGCAGGTCAAGTCCGGGACAATCTT
TGACAATTTCCTCATCACCAATGATGAGGCCTATGCAGAGGAGTTTGGCAATGAGACGTGGGGTGTTACC
AAGGCTGCAGAGAAGCAGATGAAGGACAAGCAGGATGAGGAGCAGAGGCTTAAGGAAGAAGAAGAGGACA
AGAAGCGTAAAGAGGAAGAAGAAGCTGAGGATAAAGAGGATGATGATGACAGAGATGAAGATGAGGACGA
AGAAGATGAGAAGGAGGAAGATGAGGAAGAATCCCCTGGCCAAGCCAAGGATGAGCTGTAG

Translation (416 aa):
MLLSVPLLLGLLGLAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQ
DARFYALSAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPG
TKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKD
PDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQI
DNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVT
KAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKEDDDDRDEDEDEEDEKEEDEEESPGQAKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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