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Report for CCDS89772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89772.1 Public Mus musculus 4 Ccdc171 23 108 98 CCDS HistoryNCBI Gene:320226Re-query CCDS DB by CCDS ID:89772.1Re-query CCDS DB by GeneID:320226See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231339.1 ENSMUSP00000155912.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231339.1Link to Ensembl Protein Viewer:ENSMUSP00000155912.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231339Re-query CCDS DB by Protein ID:ENSMUSP00000155912
Original member Current member NCBI NM_001355378.1 NP_001342307.1 Accepted alive Link to Nucleotide Sequence:NM_001355378.1Link to Protein Sequence:NP_001342307.1Re-query CCDS DB by Nucleotide ID:NM_001355378Re-query CCDS DB by Protein ID:NP_001342307Link to BLAST:NP_001342307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342307.1 1332 E9Q1U1-2 1332 100% 0 0

Chromosomal Locations for CCDS 89772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83535891 83535937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83546834 83546969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83549603 83549777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83554694 83554884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83557899 83558030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83580748 83580894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83601608 83601700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83604022 83604182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83620825 83620963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83635640 83635742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83655528 83655634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83657312 83657401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83658321 83658521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83661716 83661883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83663502 83663690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83681005 83681509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83682299 83682415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83693747 83693973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83694253 83694435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83696251 83696436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83742928 83743073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83751854 83751908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83795200 83795331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83818000 83818152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83864232 83864447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3999 nt):
ATGAGTTTAAACACTTCAAGCAATGCCACTCCTGGGGACACCCAAAGGTTGAAAAATGCCTCACTGGATG
TAAAACAAATGCTTAAAAATGAAACAGAGTCAGATATCATCGCTGATCTCAGAAAGAAGCTCCATCGGGC
TAAGAAGGAGAAATTAGAAATGACAACTAAGCACAATGCAGAGCTGTCAAGCTATGAGAGCCAGATTGCC
AGGCTGCGGTCTGAGGTGGAAAAAGGAGAAGCGCTGCGACAGCGTCTGGAGTACGATCTGGCTGTCGCTA
GGAAGGAGGCTGGTCTGGGAAGACGGGCGGCCGAGGAGAGACTGGCCGAGGCGCAGCGGATTCAAGAGAG
GCTCTGCGCTCAGAATTCAGAACTTCAGGGAAAGGCAAATGAGATTGAGAAAACATTCCAGATTTCCCAA
GAGAAATGGAGAGAAGAATGCAGGAGATTTGAACATGACTTGGAGGAACGAGACAATATAATTCAAAATT
GCAATCAAGAATACGAGTCACTTATGCAGGAAAAAACCCGGCTACAAAAAACTCTACAGGAGATCCTGGA
GAAGCACGAACAAGAGAAGACAGAGCTGGAGTCCCGTGTCAGGGAGACCGCATTGGGCGAATTTAGATTA
CAAACAGAAGAGTGGGAAGCAGAACGGAGAGAGTTACAGCTTATAGTACAGGAGCAAGATAGTGCCGTGC
AGAGTATGCAGAAAAAAGTGGAACAGCTAGAAGCAGAGCACATGGACTGCTCTGACCTTCTACGGCGACA
GACGAGCGAGCTTGAGTTTAGCACTCAAAGGGAGGAACGCCTGAGGAAAGAGTTTGAGGCAACCACTCTG
AGGGTGAGGAAGTTGGAAGAGAATATTGAAGCAGAAAGAGCAGCACATTTGGAATCAAAATTTAATTCTG
AAATTATTCAGTTACGGATTCGAGACCTTGAAGGAGCTTTACAAGTAGAAAAAGCCAGCCAGGCAGAGGC
TGTGGCTGACCTGGAAATGATCAAGAACGAATTCAAAGAGGTTGAGAGTGCATATGAGCGAGAGAAGCAA
AACACACAGGAGAGCTGTGCAAAGCTGAACTTATTAGAAAGAGAATATTTCTCCCAAAACAAGAAACTAA
ATGAAGAGATCGAAGACCAGAAGAAAGTAATTATAGATCTTTCAAAGAGACTCCAATATAATGAAAAAAG
TTGCGGTGAGCTACAGGAGGAACTTGTAATGGCTAAGAAGCACCAGGCCTTCCTAGTGGAGACATGCGAG
AATAACGTGAGAGAACTGGAATCCATCTTGGGCAGCTTTAGCGTGTCAGCGCAGTGGACATCAGGCGTCC
ACAAGGACAAAGATAAGCCTCCCAGCTTCTCCGTCGTCCTTGAGACTTTGAGGCGGACCTTGACAGATTA
CCAGAACAAGCTGGAAGATGCATCTAATGAGCTAAACAACATAAATGATGCCAAGGAAAAGACATCCAAC
GAACTCGATTCCACCAAACAAAAGATTGAGACTCACATTAAAAATACAAAGGAGCTGCAGGATAAGCTGA
CGGAGGTCCATAAGGAGCTCAGTCACTTGCGCGCTAAGTGCGCAGACCGCGAGGCTCTGATCACCTCGTT
GAAGGTGGAGTTGCAGAACGTGCTGCACTGCTGGGAGAAGGAGAAGGCCTGTGCCGCCCAGTGTGAGAGC
GAGCTGCAGAAGCTGTCGCAGGCCTTCCAGAAGGACTCCGAGGAGAAGCTAACCTTCCTTCACACCTTGT
ATCAGCACTTGGTAGCAGGCTGTGTGCTCATAAAACAACCAGAAGGCATGTTGGATAAATTCTCTTGGTC
TGAGCTTTGTGCAGTCTTGCAGGAGAATGTTGATGCCCTCATTGCAGACCTTAACAGGGCTAATGAGAAG
ATAAGCCATCTGGAGTATATCTGTAAAAACAAGTCCGATACGATGAGAGAGCTTCAGCAGACGCAGGAAG
ACACCTTCAACAAGGTGGCGGAACAGATCAAGGCCCAGGAGAGCTGCTGGCAGAAGCAGAAGAAGGAGCT
GGAGTTCCAGTACTCTGAACTTCTCCTGGAGGTGCAGAGGAGGGCACAGAAATTTCAAGAAATTGCAGAA
AAAAACTCAGAAAAATTGAACCGCATTGAGACCTCCCATGAACAACTGGTTCGTGAGAATTCGCACTTCA
AAACCACATTGTCCAGGACGCAGAGGGAACAGACGTGCTTGCTGGCGGCCTGTGCGCTGATGGCCGGTGC
GCTGTGTCCCCTCTACAGCAGGTCATGTGCCTTATCCACACAGAGGGACTTTCTCCAGGAACAAGTCAAC
AGCTTGGAACTGTTCAAACTGGAAATTAGAACCCTGGCCCAGGCGTTGTCAGCGGTAGATGAGAAGAAAC
AAGAAGAAGCCAAAACGAAGAAAAAAACATTCAAAGGATTGGTCCGTGTCTTCCGGAAAGGCGTGATTGC
AATCTTGGCAGCAAACAGACTCAAGCTTTTGGGCCAATCCTGTGCCTTTCTTTTCACCTGGATGGAGAGT
TGTAAAGAAGGCATAGGCATGCTAGTGTGTACCGGGGAGCCCAAAGACAAGCGCCAATTCCCAAAACATC
AGAGGGAACAGTTACGCTGTTTACAGGCACTCGCGTGGCTCACCAGTTCTGACCTTCTAGGTACGGTTAT
CAGTTCTATGACAGAGCTGCAAGAAGTCATTAGTAAAACAGATCCAAATTCCAGGATTTGTGGACATTTA
CTCATAGGTGCAGCCAAGAATTCTTTTGCAAAACTAATGGATAAACTTAGCTCGGCAATGGCAAGCATCC
CTCTGCATAGCAGCCGGAGCATAACGTATGTAGAAAAGGATTCTCTGGTTCAGAGGCTGGCCCGGGGGCT
TCACAAAGTGAACACGCTGGCCCTGAAGTATGGTTTATGCAGCCATATTCCCATCATGAAAAGCACTGCA
GCGTTACAAAAGCAAATATTTGGGTTTACGCAAAGGCTGCACGCAGCTGAGGTTGAGCGCCGCTCCCTGC
GCCTCGAGGTGACAGAATACAAACGGACCGTGCACGAGATGAAAAAGGAGCTGGACAAGTCACAGAGTCT
GCAAACACAATTAAATGAATTCAAGCACTCTAAATTGATCACCCACGAGAAGTTTGAAAGTGCATGTGAA
GAACTAAATAACGCATTGCTTCGGGAACAGCAGGCACAAATGTTGCTGAATGAACAGGCCCAGCAGCTGC
AGGAGCTGAACTATAGACTTGAATTGCACTCCAGCGAGGAAGCTGACAAAAACCAGACTCTTGGAGAAGC
TGTTAAGAGTCTCTCCGAGGCAAAGATGGAGCTGAGAAGGAAAGATCAATCTCTACGTCAGCTCAATAGA
CATCTTACCCAGCTGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCCGTGATGCAGAGAGTGCCCTCC
GCATGGCAGCCAAAGACAAAGAATGTGTTGCGAATCACATGAGAACTATAGAAAACATGCTTCATAAGGT
CAGAGATCAGATCTCACTGTCACGGACTGCAGCAACTAGGAATGACTTCACCCTGCAGCTACCCAAACTG
CACCTGGAGACCTTTGCAATGGAGGGGCTCCAGGGTGGGCCAGAGGTGGTGGCATGCCAGGCCATGATTA
AAAGTTTCATGGATGTCTACCAGCTTGCAAGTGCTAGAATCTCTACCTTAGAGAAGGAAATGACATCGCA
CCGAAGTCATATAGCAACTCTCAAGTCTGAGCTCCATACAGCTTGTCTAAGAGAGAATGAAAGTTTGCAG
TCGATGGGATCCCGAGACCATTCCAACCTCTCTGTGCCTTCAAGAGCTGCCGCCCCTATGGACACAGTTG
GGGACTTGCTTCCATTGCAAGCAGAACTCGATACAACTTACACTTTCTTAAAGGAGACGTTCGTGAACAC
AGCCCCCCATTCTCTGTCATCTCAGTCCTCTCCAGGGGTGCCCACTAATGCCAAAAGACCGTCTCAGATA
GGATTATAA

Translation (1332 aa):
MSLNTSSNATPGDTQRLKNASLDVKQMLKNETESDIIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIA
RLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQ
EKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETALGEFRL
QTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTL
RVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQ
NTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCE
NNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSN
ELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCES
ELQKLSQAFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEK
ISHLEYICKNKSDTMRELQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAE
KNSEKLNRIETSHEQLVRENSHFKTTLSRTQREQTCLLAACALMAGALCPLYSRSCALSTQRDFLQEQVN
SLELFKLEIRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFRKGVIAILAANRLKLLGQSCAFLFTWMES
CKEGIGMLVCTGEPKDKRQFPKHQREQLRCLQALAWLTSSDLLGTVISSMTELQEVISKTDPNSRICGHL
LIGAAKNSFAKLMDKLSSAMASIPLHSSRSITYVEKDSLVQRLARGLHKVNTLALKYGLCSHIPIMKSTA
ALQKQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKHSKLITHEKFESACE
ELNNALLREQQAQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNR
HLTQLEQDKRRLEENIRDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKL
HLETFAMEGLQGGPEVVACQAMIKSFMDVYQLASARISTLEKEMTSHRSHIATLKSELHTACLRENESLQ
SMGSRDHSNLSVPSRAAAPMDTVGDLLPLQAELDTTYTFLKETFVNTAPHSLSSQSSPGVPTNAKRPSQI
GL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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