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Report for CCDS18018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18018.1 Public Mus musculus 4 Ankrd6 23 108 98 CCDS HistoryNCBI Gene:140577Re-query CCDS DB by CCDS ID:18018.1Re-query CCDS DB by GeneID:140577See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035719.10 ENSMUSP00000041300.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035719.10Link to Ensembl Protein Viewer:ENSMUSP00000041300.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035719Re-query CCDS DB by Protein ID:ENSMUSP00000041300
Original member Current member EBI ENSMUST00000084749.7 ENSMUSP00000081801.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084749.7Link to Ensembl Protein Viewer:ENSMUSP00000081801.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000084749Re-query CCDS DB by Protein ID:ENSMUSP00000081801
Original member Current member EBI ENSMUST00000084750.7 ENSMUSP00000081802.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084750.7Link to Ensembl Protein Viewer:ENSMUSP00000081802.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000084750Re-query CCDS DB by Protein ID:ENSMUSP00000081802
Original member Current member NCBI NM_001012450.1 NP_001012453.1 Accepted alive Link to Nucleotide Sequence:NM_001012450.1Link to Protein Sequence:NP_001012453.1Re-query CCDS DB by Nucleotide ID:NM_001012450Re-query CCDS DB by Protein ID:NP_001012453Link to BLAST:NP_001012453.1
Original member Current member NCBI NM_001012451.1 NP_001012454.1 Accepted alive Link to Nucleotide Sequence:NM_001012451.1Link to Protein Sequence:NP_001012454.1Re-query CCDS DB by Nucleotide ID:NM_001012451Re-query CCDS DB by Protein ID:NP_001012454Link to BLAST:NP_001012454.1
Original member Current member NCBI NM_001355587.1 NP_001342516.1 Accepted alive Link to Nucleotide Sequence:NM_001355587.1Link to Protein Sequence:NP_001342516.1Re-query CCDS DB by Nucleotide ID:NM_001355587Re-query CCDS DB by Protein ID:NP_001342516Link to BLAST:NP_001342516.1
Original member Current member NCBI NM_080471.3 NP_536719.2 Accepted alive Link to Nucleotide Sequence:NM_080471.3Link to Protein Sequence:NP_536719.2Re-query CCDS DB by Nucleotide ID:NM_080471Re-query CCDS DB by Protein ID:NP_536719Link to BLAST:NP_536719.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012453.1 712 Q69ZU8-1 712 100% 0 0
NP_001012454.1 712 Q69ZU8-1 712 100% 0 0
NP_001342516.1 712 Q69ZU8-1 712 100% 0 0
NP_536719.2 712 Q69ZU8-1 712 100% 0 0

Chromosomal Locations for CCDS 18018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 32806113 32806642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32808684 32808810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32810198 32810311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32815235 32815387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32816911 32817096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32817419 32817550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32818605 32818709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32821257 32821334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32822153 32822251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32823406 32823504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32824396 32824494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32827089 32827187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32828710 32828808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32836335 32836433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32860322 32860441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGAGCCAGCAGGATGCGGTCGCTGCGCTTTCAGAACGCCTGCTCATAGCTGCGTACAAAGGCCAAACAG
AGAATGTGGTTCAGCTCATCAACAAGGGTGCCAAGGTAGCCGTTACCAAGCATGGCCGGACCCCCTTGCA
CCTCGCTGCCAATAAGGGTCATCTTTCTGTGGTGCAGATTTTGCTGAAGGCTGGCTGTGACCTCGATGTG
CAAGATGATGGGGACCAGACAGCCTTGCACCGGGCCACTGTGGTGGGAAACACCGAGATCCTCACAGCGC
TTATCCGGGAGGGGTGTGCCCTGGACAGACAGGACAAGGATGGGAATACAGCCCTGCATGAAGCCGCCTG
GCACGGATTCAGCCAGTCAGCCAAGCTGCTCGTTAAAGCCGGAGCCAATGTGCTTGCCAGAAACAAGGCA
GGGAACACAGCTCTGCACCTGGCCTGCCAGAATAGTCACTCCCAGAGCACTCGCATCCTCCTGCTGGGCG
GCTCCCGGGCTGACCTCAAAAACAACGCAGGGGACACCTGTCTGCACGTGGCTGCGCGGTATAACCACTT
GTCCGTCGTCAGACTCCTCCTCAATGCTTTCTGCTCTGTCCATGAAAAGAACCAGGCTGGAGACACGGCC
CTCCATGTGGCTGCTGCCCTAAATCACAAGAAGGTAGTTAAAGTCCTGCTGGAAGCTGGTGCTGACACAA
CCATTGTGAACAATGCAGGCCAGACCCCGCTGGAGACTGCCCGCTACCACAATAATCCTGAAGTCGCACT
ACTCCTCACCAAGGCTCCCCAGATCTTGCGCTTCAGTCGTGGGCGAAGCCTGAGGAAAAGGAGAGAGAGG
CTCAAGGAAGAGAGGAGGGCCCAGTCTGTGCCCCGAGATGAGGTGGCACAGAGCAAGGGAAGTGTCTCAG
CAGGAGATACCCCCAGCAGTGAACAAGCAGTACCCCAAAAAGAGGAAGCTAGAAGAGATTGTCCACCAGC
TTCCCAGGAGCCAAGAAAGGATGAGAGGAGGAGAAAGTCGAGGCCAGAGGTGTCAGCGTTATCTGACCCC
ACCCCAGCCGCAGACCAACAGCCTGGACACCAAAAGAACCTGCACAGTCATCACCACCCCAAAAAGAAGA
GCAGACATCGGTGTTGGTCCCCACCTCCACCCCACGGGTTCAGGGCGTACCAGCTATACACGCTGTACCG
GGGCGAGGATGGAAAAGTGATGCAGGCACCAATAAAAGGTTGTCGCTGTGAACCTCTAATCAACAAGCTG
GAGAACCAGTTGGAGGCGACTGTGGAGGAAATCAGAGCTGAGTTAGGCTCGGTGCAGGATAAAGTGAACG
CGAAGCTGGGCCAGATGGAGAGCAAAACCCAGCACCAAATGTGCGTTTTGGACAAACTGATGGTGGAACG
GCTGTCCGCGGAGAGAACAGAATGCATGAATCGCCTGCAACAGCATGCAGCTGCTGAGAAGCAGGAGGGA
GAGAAACGTCAGATGTCTTTGGTAGATGAACTAAAAGCCTGGTGCATGTTGAAGATCCAGAGTCTGGAGC
TAAGACTCTCTGGAGAGTCTCGGACCTTCAGAGCTAAATCCACACCACCTCCGTCTGACTCCACTCCAGC
TGTAGACCAACCAGTGGTAGCTGCAGGGCCAGGAGCAGCTTCCGACAGCTCCTCTCAGGTTGTGAGGCCC
AAGGATAAGGCGCTCAATGCCTCGGCTGCCCACAGCCACCAGCAGGAGCTGCCTCCCTCTGACTGTACAG
GGTCTGGGTTAAGGAAGATCAAGGCCCCGGGTGCTTCCAGGTGTGATCAGCAGACTGGATCCTGTGTCAA
CCGAGGCACTCAGACCAAGAAGTCTGGGAGAAGTGGGCAGACCAAGCATCGAGGCCAGCAGCCCACTGCC
AGCAGCCCCAGTGGGCAGCAGCCATCAGCAGCAAGCAGTGATGTGCGAGACGCCTCACAAGCCCTGGAGC
TAACTCAGTATTTTTTTGAGGCCGTTTCTGCACAGATGGAAAAGTGGTATGAACGGAAAATTGAAGAAGC
ACGGAGCCAAGCAAGTCAGAAAGCTCAGCAGGATGAGGCCACATTGAAGGAACACATCAGAAGTCTGGAG
GAGGAGCTTGCCAGGCTGCGGACAAAGGTGCAGAAGTAA

Translation (712 aa):
MSQQDAVAALSERLLIAAYKGQTENVVQLINKGAKVAVTKHGRTPLHLAANKGHLSVVQILLKAGCDLDV
QDDGDQTALHRATVVGNTEILTALIREGCALDRQDKDGNTALHEAAWHGFSQSAKLLVKAGANVLARNKA
GNTALHLACQNSHSQSTRILLLGGSRADLKNNAGDTCLHVAARYNHLSVVRLLLNAFCSVHEKNQAGDTA
LHVAAALNHKKVVKVLLEAGADTTIVNNAGQTPLETARYHNNPEVALLLTKAPQILRFSRGRSLRKRRER
LKEERRAQSVPRDEVAQSKGSVSAGDTPSSEQAVPQKEEARRDCPPASQEPRKDERRRKSRPEVSALSDP
TPAADQQPGHQKNLHSHHHPKKKSRHRCWSPPPPHGFRAYQLYTLYRGEDGKVMQAPIKGCRCEPLINKL
ENQLEATVEEIRAELGSVQDKVNAKLGQMESKTQHQMCVLDKLMVERLSAERTECMNRLQQHAAAEKQEG
EKRQMSLVDELKAWCMLKIQSLELRLSGESRTFRAKSTPPPSDSTPAVDQPVVAAGPGAASDSSSQVVRP
KDKALNASAAHSHQQELPPSDCTGSGLRKIKAPGASRCDQQTGSCVNRGTQTKKSGRSGQTKHRGQQPTA
SSPSGQQPSAASSDVRDASQALELTQYFFEAVSAQMEKWYERKIEEARSQASQKAQQDEATLKEHIRSLE
EELARLRTKVQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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