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Report for CCDS35930.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
35930.1 |
Public |
Mus musculus |
10 |
Rhobtb1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:69288](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:35930.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:69288](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 10 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 35930.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000020101.11 |
ENSMUSP00000020101.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000020101.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000020101.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000020101](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000020101](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000067908.13 |
ENSMUSP00000065095.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000067908.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000065095.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000067908](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000065095](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000164034.7 |
ENSMUSP00000132068.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000164034.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000132068.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000164034](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000132068](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001081347.1 |
NP_001074816.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001081347.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001074816.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001081347](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001074816](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001074816.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001252636.1 |
NP_001239565.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001252636.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001239565.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001252636](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001239565](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001239565.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001252637.1 |
NP_001239566.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001252637.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001239566.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001252637](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001239566](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001239566.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 35930.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2088 nt): ATGGACTCTGACATGGACTACGAACGACCCAACGTTGAGACCATCAAGTGCGTGGTCGTGGGCGACAACG CCGTAGGGAAGACGCGCCTCATCTGTGCCCGGGCCTGCAACACCACCCTGACACAGTACCAGCTGCTGGC CACCCATGTGCCCACCGTGTGGGCCATTGATCAGTACCGTGTCTGCCAGGAGGTCCTGGAGCGGTCCAGG GATGTCGTCGATGAAGTGAGCATCTCCCTCAGGCTTTGGGACACGTTTGGAGATCACCACAAAGACAGGC GGTTCGCATATGGCAGGTCCGATGTTGTGGTCCTCTGCTTTAGCATCGCGAACCCCAACTCCCTAAATCA TGTGAAAACCATGTGGTATCAAGAAATCAAGCACTTTTGCCCTCGAACGCCCGTCGTCCTGGTTGGCTGC CAGCTAGACCTCCGCTACGCCGACCTGGAGGCTGTTAACCGGGCCAGACGCCCCTTAGCAAGGCCCATAA AGAGAGGTGACATTTTGCCCCCAGAAAAAGGCCGCGAGGTGGCGAAGGAACTTGGCATCCCGTACTACGA GACCAGCGTGTTTGACCAGTTTGGCATCAAGGACGTGTTCGACAATGCCATCCGAGCAGCCCTCATCTCC CGCCGGCACCTGCAGTTCTGGAAATCCCACTTGAAAAAAGTCCAGAAGCCTCTGCTTCAGGCGCCCTTCC TACCTCCGAAAGCTCCTCCCCCGGTCATCAAGGTCCCCGAGTGTCCGTCTGCGGGGACCAGCGATGCTGC CTGTTTACTGGACAACCCCCTGTGCGCCGACGTCCTCTTCGTTCTCCATGACGAGGAGCACATCTTTGCG CACCGCATTTACCTCGCTACCTCTTCTTCCAAATTCTACGACCTTTTTTTAATGGAGTGTGAAGAATCCC CTTGTTGGGGTGGAGGAGCTGGTGAGGAGGTGCCGTGCAGGGATTTTCAGGGGCGGACGCAGAGTCTTGG ATCAGCCGAGGAAGGGAAGGAGGGCCCCCAGAGGACCCCTCAGGCTGACCCAGGAGCGTCTTCAGGCCAG GACCTGCCTGAGAGTTTGGCTTTGCAGATGGAAGCCTCGGGTTCCGAGGGACACGCCCTGTCCGGCTGGA GCAAGGGGTTTGTCAGCATGCACAGGGAGGTGCGGGTCAACCCCATTTCCAAGCGGGTGGGCCCAGTGAC CGTGGTCAGGCTGGACCCATCGATGCAGTCAGGCCCTTTCCGGACCCTGCTGAGATTCCTCTACTCTGGG CAGCTGGACGAAAAGGAAAAAGATCTGCTGGGGCTGGCTCAGATGGCCGAGGTCCTGGAGATGTTTGATC TGAGGATGATGGTAGAGAATATCATGAACAAGGAGGCTTTTATGAACCAGGAGATCACGAAAGCCTTCCA CGTCCGGAAAGCCAATCGGATCAAAGAATGTCTCAGCAAGGGCACCTTCTCAGACGTGACATTTACCTTG GATGACGGAGCCATCAGCGCCCACAAGCCGCTGCTGATCTGTAGCTGCGAATGGATGGCGGCCATGTTCG GGGGTTCCTTTGTGGAAAGCGCCAACCGTGAGGTTCACCTCCCAAATATAAACAAGATGTCGATGCAGGC GGTGTTGGAATACCTCTACACCAAGCAGTTGTCACCCAACTTGGACCTGGACCCCCTGGAGTTAATTGCC TTGGCAAACAGATTTTGCCTGACACACTTGGTTGCTCTCGTAGAGCAGCATGCTGTCCAGGAGCTCACCA AGGCCGCTGTCAGTGGTGTGAGCATCGATGGTGAAGTTCTCTCCTACTTGGAGCTGGCACAGTTTCACAA TGCCAATCAGCTAGCTGCCTGGTGTTTGCATCACATCTGCACCAACTACAACAGCGTCTGTTCCAAGTTC CGCAAGGAAATCAAATCCAAGTCAGCAGACAACCAGGAGTACTTTGAGCGGCACCGCTGGCCCCCTGTGT GGTACCTGAAGGAGGAAGACCACTACCAGCGTGTGAAGAGGGAACGAGAGAAAGAGGACCTGGCGCTGAA CAAGCACCATTCAAGGAGAAAGTGGTGTTTCTGGCATTCGTCCCCAGCTGTCGCCTGA
Translation (695 aa): MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSR DVVDEVSISLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKTMWYQEIKHFCPRTPVVLVGC QLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGIPYYETSVFDQFGIKDVFDNAIRAALIS RRHLQFWKSHLKKVQKPLLQAPFLPPKAPPPVIKVPECPSAGTSDAACLLDNPLCADVLFVLHDEEHIFA HRIYLATSSSKFYDLFLMECEESPCWGGGAGEEVPCRDFQGRTQSLGSAEEGKEGPQRTPQADPGASSGQ DLPESLALQMEASGSEGHALSGWSKGFVSMHREVRVNPISKRVGPVTVVRLDPSMQSGPFRTLLRFLYSG QLDEKEKDLLGLAQMAEVLEMFDLRMMVENIMNKEAFMNQEITKAFHVRKANRIKECLSKGTFSDVTFTL DDGAISAHKPLLICSCEWMAAMFGGSFVESANREVHLPNINKMSMQAVLEYLYTKQLSPNLDLDPLELIA LANRFCLTHLVALVEQHAVQELTKAAVSGVSIDGEVLSYLELAQFHNANQLAAWCLHHICTNYNSVCSKF RKEIKSKSADNQEYFERHRWPPVWYLKEEDHYQRVKREREKEDLALNKHHSRRKWCFWHSSPAVA
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