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Report for CCDS17336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17336.1 Public Mus musculus 3 Noct 23 108 98 CCDS HistoryNCBI Gene:12457Re-query CCDS DB by CCDS ID:17336.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023849.14 ENSMUSP00000023849.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023849.14Link to Ensembl Protein Viewer:ENSMUSP00000023849.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023849Re-query CCDS DB by Protein ID:ENSMUSP00000023849
Original member Current member EBI ENSMUST00000167780.1 ENSMUSP00000130347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167780.1Link to Ensembl Protein Viewer:ENSMUSP00000130347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167780Re-query CCDS DB by Protein ID:ENSMUSP00000130347
Original member Current member NCBI NM_009834.2 NP_033964.1 Accepted alive Link to Nucleotide Sequence:NM_009834.2Link to Protein Sequence:NP_033964.1Re-query CCDS DB by Nucleotide ID:NM_009834Re-query CCDS DB by Protein ID:NP_033964Link to BLAST:NP_033964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033964.1 429 O35710-1 429 100% 0 0

Chromosomal Locations for CCDS 17336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51225104 51225287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51247805 51248074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51249697 51250532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGTATCAGAGCCCGCGGCGGCTCTGCTCGGCCCTGCTGCTCAGGGACGCCCCCGGCCTGCGCCGCACAC
TC
GTGCCCGGCCCGCGCCGAACGCTCGCCCCGCCGGTGCTCGGATCTCGGCCCAAGTCCCCGCAACTGCA
G
GCGGCGGCGGCCTCGGGCGCCGCGAGGTCGCGTCCCCGAACAGTGAGTTCCATGGGAAACGGCACCAGT
CGA
CTCTACAGTGCTCTCGCCAAGACCGTCAACAGCAGTGCAGCTGCTCAGCACCCGGAGTACTTGGTGT
CA
ACTGACCCCGAACATCTGGAGCCCATCGATCCTAAGGAACTTCTGGAGGAATGCAGGGCTGTTCTGCA
C
ACTCGGCCACCCCGCTACCAGCGGGATTTTGTGGACCTGAGGACAGATTGCTCCAGCAGCCACTCTCCC
ATT
CGCGTCATGCAGTGGAACATCCTCGCCCAAGCTCTCGGAGAAGGCAAAGACAACTTTGTGCAGTGCC
CC
GTGGAAGCGCTCAAATGGGAAGAGAGGAAGTGCCTGATCCTGGAGGAGATCCTGGCTTACCAGCCAGA
C
ATACTGTGCCTCCAGGAAGTGGACCACTACTTTGACACCTTCCAGCCACTCCTCAGTAGACTGGGCTAC
CAA
GGCACGTTTTTCCCCAAGCCCTGGTCACCATGTCTAGATGTGGAACACAACAACGGTCCAGATGGCT
GT
GCCTTATTTTTTCTCCAAAACCGATTCAAGCTTATCAGCAGCACCAATATTAGGCTGACAGCCATGAC
C
CTAAAAACCAATCAGGTGGCCATCGCACAGACCCTGGAGTGCAAGGAGTCTGGGCGACAGTTCTGCATT
GCT
GTCACCCACTTAAAAGCCCGCACTGGCTGGGAGCGGTTCCGGTCAGCTCAGGGCTGTGACCTCCTCC
AG
AACCTGCAGAACATCACCCAGGGAGCAAAGATCCCCCTGATCGTCTGCGGGGACTTCAACGCAGAGCC
A
ACCGAAGAGGTCTACAAACACTTTGCGTCCTCCAGCCTCAACCTCAACAGCGCCTACAAGCTGCTGAGT
CCC
GATGGACAGTCGGAGCCTCCCTACACAACCTGGAAGATCCGGACCTCAGGCGAGTGTCGCCACACGC
TG
GACTATATCTGGTACTCCAGACATGCTCTGAGTGTCACGTCCGCCCTGGATCTACTCACTGAAGAACA
G
ATTGGGCCCAACCGGCTCCCATCCTTCCATTACCCCTCGGACCACCTGTCCCTGGTGTGTGACTTCAGC
TTT
AACGAGGAGCCCCATGAGCTCTTTTAA


Translation (429 aa):
MYQSPRRLCSALLLRDAPGLRRTLVPGPRRTLAPPVLGSRPKSPQLQAAAASGAARSRPRTVSSMGNGTS
R
LYSALAKTVNSSAAAQHPEYLVSTDPEHLEPIDPKELLEECRAVLHTRPPRYQRDFVDLRTDCSSSHSP
I
RVMQWNILAQ
ALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGY
Q
GTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLISSTNIRLTAMTLKTNQVAIAQTLECKESGRQFCI
A
VTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLS
P
DGQSEPPYTTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDFS
F
NEEPHELF




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