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Report for CCDS16294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16294.1 Public Mus musculus 2 Pramel6 23 108 98 CCDS HistoryNCBI Gene:347711Re-query CCDS DB by CCDS ID:16294.1Re-query CCDS DB by GeneID:347711See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026956.3 ENSMUSP00000026956.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026956.3Link to Ensembl Protein Viewer:ENSMUSP00000026956.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026956Re-query CCDS DB by Protein ID:ENSMUSP00000026956
Original member Current member EBI ENSMUST00000111572.7 ENSMUSP00000107198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111572.7Link to Ensembl Protein Viewer:ENSMUSP00000107198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111572Re-query CCDS DB by Protein ID:ENSMUSP00000107198
Original member Current member NCBI NM_001356544.1 NP_001343473.1 Accepted alive Link to Nucleotide Sequence:NM_001356544.1Link to Protein Sequence:NP_001343473.1Re-query CCDS DB by Nucleotide ID:NM_001356544Re-query CCDS DB by Protein ID:NP_001343473Link to BLAST:NP_001343473.1
Original member Current member NCBI NM_001356545.1 NP_001343474.1 Accepted alive Link to Nucleotide Sequence:NM_001356545.1Link to Protein Sequence:NP_001343474.1Re-query CCDS DB by Nucleotide ID:NM_001356545Re-query CCDS DB by Protein ID:NP_001343474Link to BLAST:NP_001343474.1
Original member Current member NCBI NM_001356546.1 NP_001343475.1 Accepted alive Link to Nucleotide Sequence:NM_001356546.1Link to Protein Sequence:NP_001343475.1Re-query CCDS DB by Nucleotide ID:NM_001356546Re-query CCDS DB by Protein ID:NP_001343475Link to BLAST:NP_001343475.1
Original member Current member NCBI NM_178249.3 NP_839980.1 Accepted alive Link to Nucleotide Sequence:NM_178249.3Link to Protein Sequence:NP_839980.1Re-query CCDS DB by Nucleotide ID:NM_178249Re-query CCDS DB by Protein ID:NP_839980Link to BLAST:NP_839980.1

Chromosomal Locations for CCDS 16294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87508458 87508744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87509181 87509768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87510201 87510783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGAGTGTTGACTCCCTACCCACCCTCTTTCAGTGGGCAAGAGACAATCTACTGAAGGAGGAAGCTTTAG
CCATTTCTGCTCTGGAGGAACTGCCCATTCATCTATTCCCAGAGATGTTCAAGGTAGCCTTCACTGATAG
GCATACAAAGGTCCTGATTGCAATGGTGTCTGCCTGGCCCTTCCCATGCCTTCCTGTAGGAACCCTAATA
GAGGACCCACATCTGGAGACTTTGAAAGCAGTGCTTGATGGGTTGAATGTCCTGGTAACAGGGAAGGTTC
ATTCCAGTAGGTGCAAACTCAGAGTCCTTGATTTGAGGAGGAATGTGCACCATGACTTCTGGAGCATACA
GACTGGATCCCATGAAGATAACTGCCCAGCACAGATCGTGGCACAGAAGCAGCCAGTGGAGACCTGCCCT
AACCCTAGAAGGGAGATACCTTTTATGGTGGTGACCGACTTTGAACTCACGCAGGAGAGTTTCGATGAAT
GGACCATATACTTGATGCAGTGGATCCAGGAGAGAAAATCTTCCATTCATCTATGCTGTAGGAAGCTGAA
CAGTTGTGCCTCACCAGTCTCTAATGTCATAGAGATCTTTAAATTGGTGGATTTAAACTGTATCCTGGAG
CTACAGCTGAGTCAGTGGTGGCCTGAAGTCCTGGAAGAACTTGATCCTTACCTGGAGGGAATGAATAATC
TTCACACACTCATGTTAGAGGGATTGAAGCCCTTCAGATTTACTGCTTGTGAAGAAGACCAGGAAGACGA
GTGGCAAAGCACGTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCCAGAATCTCTATTTGAATGATATC
TACCTTCTAGAAGACTCCCTTGACAAGTGGCTTGGCTGCCTGAAGACCCCTTTGAAGACCTTGTCAATTA
CGGACTGCCCTAGGCTCTTACAGTCAGACTTCGAGTGCCTGCCAAATTGTCCGAATATTTGTAAGCTCAA
GCATCTGAACCTGAATGCTCTGTTTCTATCTGATGTAGGCTATGAGATTCCAGGGCTCATCCTTGAGAAA
GTCACAAGTACCCTGCAAATTCTGGAACTGGAGAGGTGTGGAATGACAGACCCTCATTTCAAAGCCCTCA
TGCCTGCTCTGAGCAAATGCTCCCAGCTCCTTAAAGTCAGCTTCTGTCATAATGATATCTCCCTGCGTGT
CCTGAAGACCCTTCTTTGTCACACAGCCAAACTGAGCCAGCTGACCCAGGAGCTGTACCCTGCCCCTCAG
GAATGCTATGAGGATTACAAGATACTTAAAGACAGATTTAAGAAACTTTGTCCAGAACTGCTGAACATAC
TTAAGGCCAAAAGGCAGCCCAAGAAAGTCTCTTTTACTACACAAACCTGCTTGAAGTGTTTACATTCCTG
TCATTATTATTATAACCTGGAGGCTACAGATTGCCTTTGTCAGTGCATTTGTCAGTAA

Translation (485 aa):
MSVDSLPTLFQWARDNLLKEEALAISALEELPIHLFPEMFKVAFTDRHTKVLIAMVSAWPFPCLPVGTLI
EDPHLETLKAVLDGLNVLVTGKVHSSRCKLRVLDLRRNVHHDFWSIQTGSHEDNCPAQIVAQKQPVETCP
NPRREIPFMVVTDFELTQESFDEWTIYLMQWIQERKSSIHLCCRKLNSCASPVSNVIEIFKLVDLNCILE
LQLSQWWPEVLEELDPYLEGMNNLHTLMLEGLKPFRFTACEEDQEDEWQSTLPSLLSNFGSLQNLYLNDI
YLLEDSLDKWLGCLKTPLKTLSITDCPRLLQSDFECLPNCPNICKLKHLNLNALFLSDVGYEIPGLILEK
VTSTLQILELERCGMTDPHFKALMPALSKCSQLLKVSFCHNDISLRVLKTLLCHTAKLSQLTQELYPAPQ
ECYEDYKILKDRFKKLCPELLNILKAKRQPKKVSFTTQTCLKCLHSCHYYYNLEATDCLCQCICQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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