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Report for CCDS22571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22571.1 Public Mus musculus 8 Cdh11 23 108 98 CCDS HistoryNCBI Gene:12552Re-query CCDS DB by CCDS ID:22571.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075190.4 ENSMUSP00000074681.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075190.4Link to Ensembl Protein Viewer:ENSMUSP00000074681.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075190Re-query CCDS DB by Protein ID:ENSMUSP00000074681
Original member NCBI NM_009866.5 NP_033996.4 Updated not alive Link to Nucleotide Sequence:NM_009866.5Link to Protein Sequence:NP_033996.4Re-query CCDS DB by Nucleotide ID:NM_009866Re-query CCDS DB by Protein ID:NP_033996
Current member NCBI NM_009866.6 NP_033996.4 Accepted alive Link to Nucleotide Sequence:NM_009866.6Link to Protein Sequence:NP_033996.4Re-query CCDS DB by Nucleotide ID:NM_009866Re-query CCDS DB by Protein ID:NP_033996Link to BLAST:NP_033996.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033996.4 796 P55288 796 100% 0 0

Chromosomal Locations for CCDS 22571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 102634314 102634810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102636928 102637179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102647463 102647580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102647798 102647931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102650623 102650759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102658189 102658442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102664604 102664791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102667998 102668165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102670053 102670172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102673812 102674106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102679612 102679839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGAAGGAGAACTACTGTTTACAAGCTGCCCTGGTGTGCCTGAGCATGCTATACCACAGCCAGGCGTTTG
CTCTGGAGCGACGAAGCCACCTGCATCCCTCTTTCCATGGACACCATGAGAAGGGCAAGGAGGGGCAGGT
GCTGCAACGCTCCAAGAGAGGCTGGGTCTGGAACCAATTCTTTGTGATAGAAGAGTACACCGGGCCTGAC
CCTGTGCTGGTGGGCAGGCTTCATTCTGACATTGACTCCGGTGATGGGAACATTAAATACATTCTCTCAG
GTGAAGGAGCGGGAACCATTTTTGTGATTGATGACAAATCAGGGAACATTCATGCCACCAAGACATTGGA
CCGAGAGGAGAGAGCCCAGTACACACTGATGGCTCAGGCGGTGGACAGGGACACCAACAGACCACTGGAG
CCACCTTCAGAATTCATTGTTAAGGTCCAGGACATTAATGACAACCCTCCAGAGTTTCTGCATGAAATCT
ATCATGCCAATGTGCCTGAGAGGTCCAATGTGGGAACATCAGTTATCCAAGTGACAGCCTCTGATGCAGA
TGATCCCACCTATGGAAATAGTGCCAAGTTAGTGTATAGCATCCTTGAAGGACAACCCTATTTCTCGGTG
GAGGCCCAAACAGGTATCATCAGGACAGCCCTTCCCAATATGGACAGAGAAGCCAAGGAGGAGTACCACG
TGGTGATCCAGGCCAAGGACATGGGTGGACACATGGGTGGACTCTCAGGGACAACCAAAGTGACGATCAC
TCTGACTGATGTCAACGACAACCCACCAAAGTTTCCACAGAGCGTGTACCAGATGTCTGTATCAGAAGCA
GCTGTCCCGGGGGAGGAAGTAGGAAGGGTGAAGGCTAAAGACCCAGACATTGGAGAAAATGGCTTAGTCA
CATACAATATCGTTGATGGAGACGGCATAGAACTGTTTGAAATTACAACAGACTATGAAACACAGGATGG
TGTGGTGAAGCTGAAAAAGCCTGTAGATTTTGAAACCAAAAGAGCTTATAGCTTGAAGATAGAGGCCGCC
AATGTTCACATTGATCCGAAGTTCATCAGCAATGGACCTTTCAAGGACACTGTGACCGTCAAGATTTCAG
TAGAAGATGCCGATGAGCCTCCCATGTTCTTGGCCCCAAGTTATATCCATGAAGTTCAAGAAAATGCAGC
TGCTGGCACTGTGGTTGGGAGAGTACATGCCAAAGACCCAGATGCTGCCAACAGCCCAATAAGGTATTCA
ATTGATCGTCATACTGACCTCGACAGGTTTTTCACGATTAATCCAGAAGATGGTTTTATTAAAACTACGA
AACCTCTAGATAGGGAAGAAACTGCCTGGCTCAACATCTCTGTCTTCGCAGCAGAAATTCACAACAGACA
TCAGGAAACCAAAGTCCCAGTGGCCATCAGGGTCCTGGATGTCAATGACAATGCTCCTAAGTTTGCTGCC
CCTTATGAAGGTTTTATCTGTGAGAGCGATCACCCCAAGGCACTCTCCAACCAGCCAATAGTTACAGTTA
GTGCAGATGACCAGGACGACACAGCCAATGGACCAAGATTTATCTTCAGCCTACCCCCTGAAATCATGCA
CAACCCAAACTTCACAGTAAGAGACAACAGAGATAACACTGCAGGAGTATATGCCCGACGTGGAGGGTTC
AGTCGGCAGAAGCAGGACTTCTACCTCCTGCCCATTGTGATCAGTGATGGTGGCATTCCACCTATGAGTA
GCACCAATACCCTCACTATCAAAGTCTGTGGCTGTGATGTGAATGGGGCACTGTTGTCCTGTAACGCTGA
AGCCTACATCCTGAATGCCGGTCTGAGCACTGGGGCACTGATCGCCATCCTTGCCTGCATCGTCATTCTT
CTGGTCATCGTTGTGCTGTTTGTTACCCTGAGGAGGCAAAAGAAAGAACCACTCATTGTATTTGAAGAGG
AGGATGTCCGTGAGAACATCATAACCTATGATGATGAAGGGGGTGGTGAGGAAGACACTGAAGCCTTCGA
CATAGCCACCCTGCAGAATCCTGACGGCATCAATGGATTTATCCCTCGCAAAGATATCAAACCTGAGTAT
CAGTATATGCCTAGACCTGGGCTGCGACCAGCACCCAACAGTGTGGATGTGGACGACTTCATCAACACAA
GAATACAGGAGGCAGATAATGATCCCACAGCCCCTCCCTATGACTCCATCCAAATCTATGGTTATGAGGG
CCGGGGTTCCGTGGCTGGGTCCCTGAGCTCCTTGGAGTCTGCCACGACAGACTCAGACCTGGACTACGAC
TATCTACAGAACTGGGGACCTCGTTTTAAGAAACTGGCAGACTTGTATGGCTCCAAAGACACTTTTGATG
ATGACTCTTAA

Translation (796 aa):
MKENYCLQAALVCLSMLYHSQAFALERRSHLHPSFHGHHEKGKEGQVLQRSKRGWVWNQFFVIEEYTGPD
PVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLE
PPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSV
EAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEA
AVPGEEVGRVKAKDPDIGENGLVTYNIVDGDGIELFEITTDYETQDGVVKLKKPVDFETKRAYSLKIEAA
NVHIDPKFISNGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNISVFAAEIHNRHQETKVPVAIRVLDVNDNAPKFAA
PYEGFICESDHPKALSNQPIVTVSADDQDDTANGPRFIFSLPPEIMHNPNFTVRDNRDNTAGVYARRGGF
SRQKQDFYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYILNAGLSTGALIAILACIVIL
LVIVVLFVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEY
QYMPRPGLRPAPNSVDVDDFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYD
YLQNWGPRFKKLADLYGSKDTFDDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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