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Report for CCDS42503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42503.1 Public Homo sapiens 19 ZNF440 24 110 108 CCDS HistoryNCBI Gene:126070Re-query CCDS DB by CCDS ID:42503.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42503.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304060.10 ENSP00000305373.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304060.10Link to Ensembl Protein Viewer:ENSP00000305373.5Re-query CCDS DB by Nucleotide ID:ENST00000304060Re-query CCDS DB by Protein ID:ENSP00000305373
Original member Current member NCBI NM_152357.3 NP_689570.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152357.3Link to Protein Sequence:NP_689570.2Re-query CCDS DB by Nucleotide ID:NM_152357Re-query CCDS DB by Protein ID:NP_689570Link to BLAST:NP_689570.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689570.2 595 Q8IYI8 595 100% 0 0

Chromosomal Locations for CCDS 42503.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11814448 11814450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11830283 11830409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11830617 11830677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11831368 11832964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGGACCCAGTGGCTTTTAAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTT
CCCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTTTAGGAAAAAGGTG
GAAAGACCAGAACATTGAATATGAGCACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGAAAAA
GTCAATGAAATTAAAGATGACAGTCATTGTGGAGAAACTTTTACCCCAGTTCCAGATGACAGACTGAACT
TCCAGGAGAAGAAAGCTTCTCCTGAAGTAAAATCATGTGAAAGCTTTGTGTGTGGAGAAGTTGGCCTAGG
TAACTCATCTTTTAATATGAACATCAGAGGTGACATTGGACACAAGGCATATGAGTATCAGGAATATGGA
CCAAAGCCATGTAAGTGTCAACAACCTAAAAAAGCCTTCAGATACCGCCCCTCCTTTAGAACACAAGAAA
GGGATCACACTGGAGAGAAACCCAATGCTTGTAAAGTATGTGGAAAAACCTTTATTTCCCATTCAAGTGT
TCGAAGACACATGGTAATGCACAGTGGGGATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCAT
TGTCTCAGATTATATCTTATCCATGAAAGAATTCACACTGGAGAGAAACCATGTGAATGTAAACAGTGTG
GTAAATCCTTTAGTTATTCTGCTACCCATCGAATACATAAAAGAACTCACACTGGAGAAAAGCCTTATGA
ATATCAGGAGTGTGGGAAAGCATTTCATAGTCCCAGATCCTATCGTAGACATGAAAGGATTCACATGGGA
GAAAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCACGTGTCCCCGTTATGTTCGTATACATGAAA
GGACCCACTCTAGGAAAAATCTCTATGAATGTAAGCAGTGTGGGAAAGCATTATCCTCTCTTACAAGTTT
TCAAACACACGTAAGATTGCACTCTGGAGAAAGACCTTATGAATGTAAGATATGTGGAAAAGACTTTTGT
TCTGTGAATTCATTTCAAAGACATGAAAAAATTCACAGTGGAGAGAAACCCTATAAATGTAAGCAGTGTG
GTAAAGCCTTCCCTCATTCCAGTTCCCTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTATGA
GTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCACACCTTCGAGTGCATGGTAGGACTCACACTGGA
GAGAAACCGTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAATAACCTTCAAAGTCATGAAA
GGACACAAACACACATAAGAATACACTCTGGAGAAAGACGTTATAAATGTAAGATATGTGGGAAAGGCTT
TTATTGTCCCAAATCATTTCAAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAATGCAAGCAA
CGTTCAGTAGTTCCTTCAGTAGTTCCAGTTCCTTTTGATATCATGAAAGGACTCACACTGGAGAGAAGCC
CTATAAATGCGAGCAATGTGGGAAAGCCTTCAGAGCTGTGTCAATCCTTTGAATGCATGGTAGGACTCAC
CCTGAAGAGAAACCCTATGAGTGTGAGCAATGACGGAAAGCCTTCAGATCTGCCCCACACCTTTGAATAC
GTGGTAGGACACACAATGGAGAGAAGCCCTATGCATGTAAGGAATGTGGGAAACCCTTCGGATCTGCCCA
GAACCTTCGAATTCATGAAAGGACACAAACACACATAA

Translation (595 aa):
MDPVAFKDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSLGKRWKDQNIEYEHQNPRRNFRSLIEEK
VNEIKDDSHCGETFTPVPDDRLNFQEKKASPEVKSCESFVCGEVGLGNSSFNMNIRGDIGHKAYEYQEYG
PKPCKCQQPKKAFRYRPSFRTQERDHTGEKPNACKVCGKTFISHSSVRRHMVMHSGDGPYKCKFCGKAFH
CLRLYLIHERIHTGEKPCECKQCGKSFSYSATHRIHKRTHTGEKPYEYQECGKAFHSPRSYRRHERIHMG
EKAYQCKECGKAFTCPRYVRIHERTHSRKNLYECKQCGKALSSLTSFQTHVRLHSGERPYECKICGKDFC
SVNSFQRHEKIHSGEKPYKCKQCGKAFPHSSSLRYHERTHTGEKPYECKQCGKAFRSASHLRVHGRTHTG
EKPYECKECGKAFRYVNNLQSHERTQTHIRIHSGERRYKCKICGKGFYCPKSFQRHEKTHTGEKLYECKQ
RSVVPSVVPVPFDIMKGLTLERSPINASNVGKPSELCQSFECMVGLTLKRNPMSVSNDGKPSDLPHTFEY
VVGHTMERSPMHVRNVGNPSDLPRTFEFMKGHKHT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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