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Report for CCDS39582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39582.1 Public Mus musculus 6 Chl1 23 108 98 CCDS HistoryNCBI Gene:12661Re-query CCDS DB by CCDS ID:39582.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066905.8 ENSMUSP00000063933.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066905.8Link to Ensembl Protein Viewer:ENSMUSP00000063933.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066905Re-query CCDS DB by Protein ID:ENSMUSP00000063933
Original member Current member EBI ENSMUST00000203830.2 ENSMUSP00000144758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203830.2Link to Ensembl Protein Viewer:ENSMUSP00000144758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203830Re-query CCDS DB by Protein ID:ENSMUSP00000144758
Original member Current member NCBI NM_007697.2 NP_031723.2 Accepted alive Link to Nucleotide Sequence:NM_007697.2Link to Protein Sequence:NP_031723.2Re-query CCDS DB by Nucleotide ID:NM_007697Re-query CCDS DB by Protein ID:NP_031723Link to BLAST:NP_031723.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031723.2 1209 P70232-1 1209 100% 0 0

Chromosomal Locations for CCDS 39582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 103641971 103642061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103647224 103647329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103649490 103649677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103664678 103664800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103665811 103665981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103668728 103668848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103674973 103675157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103683148 103683279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103690216 103690356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103691566 103691677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103693021 103693187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103695337 103695502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103698105 103698229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103699140 103699241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103700405 103700602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103701806 103701876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103706414 103706636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103708422 103708537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103708708 103708912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103709123 103709245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103711067 103711246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103714445 103714606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103715268 103715399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103717559 103717631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 103729119 103729335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3630 nt):
ATGATGGAATTGCCATTATGTGGAAGAGGACTGATCCTAAGTCTAATTTTCCTCCTGTTAAAATTGTCAG
CAGCTGAAATACCACTCTCCGTTCAACAGGTTCCAACAATTGTAAAGCAGTCATACGTGCAGGTGGCCTT
TCCCTTCGATGAGTATTTTCAAATTGAATGTGAAGCGAAAGGAAACCCTGAACCAATATTTTCATGGACT
AAGGACGATAAGCCTTTTGATCTTTCTGATCCTCGGATAATTGCGGCTAACAATTCAGGCACATTCAAGA
TCCCAAATGAGGGCCACATCTCTCACTTTCAAGGAAAATACCGCTGTTTCGCATCCAATAGACTAGGAAC
TGCAGTATCAGAAGAAATAGAGTTCATAGTACCAGGGGTTCCAAAATTCCCAAAAGAAAAAATTGAACCC
ATTGATGTAGAAGAAGGGGATTCCATTGTCTTACCCTGCAACCCTCCAAAAGGCCTCCCACCTTTGCACA
TCTATTGGATGAATATTGAGTTAGAACACATTGAACAAGATGAGAGAGTATACATGAGCCAAAGAGGAGA
TCTGTACTTTGCAAATGTGGAAGAAAATGACAGTCGGAATGATTACTGTTGCTTCGCTGCATTTCCAAAA
TTAAGAACGATTGTACAGAAAATGCCAATGAAACTGACTGTGAACAGTTCAAATTCCATCAAGCAAAGGA
AACCCAAACTTCTGTTGCCTCCTGCCCAAATGGGAAGTTTATCTGCAAAGACTGTACTCAAAGGGGATAC
ACTATTGCTCGAGTGTTTTGCGGAGGGCCTACCAACTCCACATATCCAGTGGAGCAAACCAGGTAGTGAA
TTACCAGAGGGAAGAGCAACAATTGAAGTTCATGAAAAGACATTGAAGATAGAAAACATCTCCTACCAGG
ATAGAGGAAATTATCGCTGTACAGCCAACAATTTGTTGGGGAAAGCCAGTCATGATTTTCACGTCACAGT
AGAAGAGCCTCCACGCTGGAAAAAGAAGCCTCAGAGTGCCGTGTACAGCACGGGGAGCAGTGGCATCTTG
TTGTGTGAAGCAGAAGGCGAACCTCAACCCACAATCAAATGGAGACTCAATGGCTTGCCGATTGAAAAAC
ATCCATTTCCTGGTGACTTTATGTTCCCCAGGGAAATCAGTTTTACAAACTTACTGCCAAATCATACTGG
TGTATATCAGTGTGAAGCCTCAAATATTCACGGAACCATTCTGGCCAATGCCAATATTGACGTTATAGAT
GTTATCCCACTGATAAAAACTAAGAATGAAGAAAACTACGCGACAGTGGTTGGCTACAGCGCTTTCTTAC
ACTGCGAGTACTTTGCTTCTCCCAAGGCCACCGTGGTCTGGGAAGTGGCTGATGAGACACATCCCCTGGA
AGGTGATCGGTACCATACGCATGAAAACGGCACACTGGAGATCTACAGAACTACTGAGGAGGATGCGGGG
TCCTACTCTTGTTGGGTAGACAATGCCATGGGAAAAGCCGTCATCACAGCGAACTTGGATATTAGAAATG
CTACAAAGCTCAGAGTTTCTCCTAAGAATCCTCGAATCCCTAAATCACATGTGCTTGAACTATACTGCGA
AAGCCAGTGTGACTCACATTTGAAACACAGTTTGAAGTTGTCCTGGAGTAAAGATGGAGAAGCTTTTGAG
ATGAATGGCACAGAAGATGGCAGAATAGTGATTGACGGAGCTTACCTGACCATATCTAACATCACAGCAG
AAGATCAGGGTGTTTACTCCTGTTCTGCTCAAACTTCTCTTGATAGTACTTCGGAAAAAACTCAAGTAAC
CGTCCTTGGTGTTCCAGATCCGCCAGGAAACCTTCACTTGTCAGAAAGACAAAACAGAAGTGTCCGGCTG
TCCTGGGAAGCAGGAGATGACCACAACAGCAAAATCAGCGAGTACATTGTAGAATTTGAAGGGAACAGAG
AGGAGCCTGGAAAGTGGGAGGAGCTAACTAGAGTCCAGGGAGAAGAAACAGATGTCGTGTTATCTTTGGC
TCCTTATGTGAGATATCAGTTTAGGGTCACAGCTGTAAACGAAGTCGGAAGAAGCCACGCCAGCCTGCCT
TCAGACCATCATGAAACTCCACCAGCAGCTCCAGACAAGAATCCCCAGAACATCAGAGTTCAAGCATCTC
AACCCAAGGAAATGATTATAAAATGGGAGCCTTTGAAATCCATGGAACAGAATGGGCCAGGACTGGAGTA
CAAAGTGAGCTGGAAGCCCCAGGGAGCCCCCGAAGAGTGGGAAGAAGAAATAGTTACAAACCACACACTA
CGTGTGATGACACCTACTGTCTATGCTCCTTATGATGTCAAGGTCCAAGCCATCAATCAACTAGGCTCCA
GCCCTGACCCTCAGCCAGTGACACTCTATTCAGGGGAAGACTATCCTAGTACAGCCCCTGTGATCCAGCG
TGTGGATGTTATGAACAGTACATTAGTTAAAGTTACCTGGTCATCCATTCCTAAGGAAACAGTACACGGA
CTTCTAAGAGGGTACCAGATAAATTGGTGGAAAACCAAAAGCCTGTTGGATGGAAGGACACATCCCAAAG
AAGTAAACATTCTAAGGTTTTCAGGACAGCGAAACTCTGGAATGGTTCCTTCCCTAGACCCCTTTAGTGA
ATTTCACTTAACAGTCTTAGCCTATAACTCCAAAGGAGCTGGTCCAGAGAGCGAGCCTTATATATTTCAG
ACACCAGAAGGAGTACCTGAACAACCAAGTTTTCTCAAGGTCATCAAAGTTGATAAAGACACTGCCACCT
TATCCTGGGGCCTTCCTAAGAAACTAAATGGAAATTTAACTGGTTATCTCTTACAATACCAGATAATAAA
TGACACCTACGAGCTTGGAGAGTTAAATGAAATCAACGTTACTACTCCATCTAAATCCAGCTGGCATCTC
TCCAACCTCAACTCAACAACAAAATACAAATTCTACCTGAGGGCGTGCACCTCAAGAGGCTGTGGAAAGC
CAATAAGTGAAGAAGGTGCCACCCTAGGAGAAGGGAGTAAAGGTATCAGGAAGATAACAGAAGGAGTAAA
TGTTACCCAAAAGATTCACCCTGTAGAGGTACTTGTGCCGGGAGCGGAACATATTGTTCACCTAATGACT
AAGAATTGGGGTGATAACGATAGCATTTTTCAAGATGTAATTGAGACAAGAGGGAGAGAATATGCTGGCT
TATATGATGACATCTCCACTCAAGGCTGGTTTATTGGACTGATGTGTGCAATTGCTCTTCTTACACTGAT
ATTGTTAACTATTTGCTTTGTGAAGAGGAACAGAGGTGGAAAGTATTCAGTAAAAGAAAAGGAAGATTTA
CACCCAGATCCAGAAGTTCAGTCAGCAAAAGATGAAACTTTTGGTGAATACAGCGACAGTGATGAAAAAC
CTCTCAAGGGAAGCCTTCGGTCCCTGAATAGGAACATGCAGCCCACAGAGAGTGCTGACAGTTTAGTGGA
ATATGGAGAGGGAGACCAGTCCATATTCAACGAAGATGGATCGTTTATTGGCGCATACACTGGAGCTAAG
GAGAAGGGATCCGTTGAAAGCAATGGAAGTTCAACTGCCACCTTCCCACTCCGGGCATGA

Translation (1209 aa):
MMELPLCGRGLILSLIFLLLKLSAAEIPLSVQQVPTIVKQSYVQVAFPFDEYFQIECEAKGNPEPIFSWT
KDDKPFDLSDPRIIAANNSGTFKIPNEGHISHFQGKYRCFASNRLGTAVSEEIEFIVPGVPKFPKEKIEP
IDVEEGDSIVLPCNPPKGLPPLHIYWMNIELEHIEQDERVYMSQRGDLYFANVEENDSRNDYCCFAAFPK
LRTIVQKMPMKLTVNSSNSIKQRKPKLLLPPAQMGSLSAKTVLKGDTLLLECFAEGLPTPHIQWSKPGSE
LPEGRATIEVHEKTLKIENISYQDRGNYRCTANNLLGKASHDFHVTVEEPPRWKKKPQSAVYSTGSSGIL
LCEAEGEPQPTIKWRLNGLPIEKHPFPGDFMFPREISFTNLLPNHTGVYQCEASNIHGTILANANIDVID
VIPLIKTKNEENYATVVGYSAFLHCEYFASPKATVVWEVADETHPLEGDRYHTHENGTLEIYRTTEEDAG
SYSCWVDNAMGKAVITANLDIRNATKLRVSPKNPRIPKSHVLELYCESQCDSHLKHSLKLSWSKDGEAFE
MNGTEDGRIVIDGAYLTISNITAEDQGVYSCSAQTSLDSTSEKTQVTVLGVPDPPGNLHLSERQNRSVRL
SWEAGDDHNSKISEYIVEFEGNREEPGKWEELTRVQGEETDVVLSLAPYVRYQFRVTAVNEVGRSHASLP
SDHHETPPAAPDKNPQNIRVQASQPKEMIIKWEPLKSMEQNGPGLEYKVSWKPQGAPEEWEEEIVTNHTL
RVMTPTVYAPYDVKVQAINQLGSSPDPQPVTLYSGEDYPSTAPVIQRVDVMNSTLVKVTWSSIPKETVHG
LLRGYQINWWKTKSLLDGRTHPKEVNILRFSGQRNSGMVPSLDPFSEFHLTVLAYNSKGAGPESEPYIFQ
TPEGVPEQPSFLKVIKVDKDTATLSWGLPKKLNGNLTGYLLQYQIINDTYELGELNEINVTTPSKSSWHL
SNLNSTTKYKFYLRACTSRGCGKPISEEGATLGEGSKGIRKITEGVNVTQKIHPVEVLVPGAEHIVHLMT
KNWGDNDSIFQDVIETRGREYAGLYDDISTQGWFIGLMCAIALLTLILLTICFVKRNRGGKYSVKEKEDL
HPDPEVQSAKDETFGEYSDSDEKPLKGSLRSLNRNMQPTESADSLVEYGEGDQSIFNEDGSFIGAYTGAK
EKGSVESNGSSTATFPLRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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