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Report for CCDS18025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18025.1 Public Mus musculus 4 Cnr1 23 108 98 CCDS HistoryNCBI Gene:12801Re-query CCDS DB by CCDS ID:18025.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057188.6 ENSMUSP00000055797.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057188.6Link to Ensembl Protein Viewer:ENSMUSP00000055797.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057188Re-query CCDS DB by Protein ID:ENSMUSP00000055797
Original member Current member EBI ENSMUST00000084736.2 ENSMUSP00000081787.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084736.2Link to Ensembl Protein Viewer:ENSMUSP00000081787.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084736Re-query CCDS DB by Protein ID:ENSMUSP00000081787
Original member Current member NCBI NM_001355020.2 NP_001341949.1 Accepted alive Link to Nucleotide Sequence:NM_001355020.2Link to Protein Sequence:NP_001341949.1Re-query CCDS DB by Nucleotide ID:NM_001355020Re-query CCDS DB by Protein ID:NP_001341949Link to BLAST:NP_001341949.1
Original member Current member NCBI NM_001355021.2 NP_001341950.1 Accepted alive Link to Nucleotide Sequence:NM_001355021.2Link to Protein Sequence:NP_001341950.1Re-query CCDS DB by Nucleotide ID:NM_001355021Re-query CCDS DB by Protein ID:NP_001341950Link to BLAST:NP_001341950.1
Original member Current member NCBI NM_001365881.1 NP_001352810.1 Accepted alive Link to Nucleotide Sequence:NM_001365881.1Link to Protein Sequence:NP_001352810.1Re-query CCDS DB by Nucleotide ID:NM_001365881Re-query CCDS DB by Protein ID:NP_001352810Link to BLAST:NP_001352810.1
Original member Current member NCBI NM_007726.5 NP_031752.1 Accepted alive Link to Nucleotide Sequence:NM_007726.5Link to Protein Sequence:NP_031752.1Re-query CCDS DB by Nucleotide ID:NM_007726Re-query CCDS DB by Protein ID:NP_031752Link to BLAST:NP_031752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341949.1 473 P47746 473 100% 0 0
NP_001341950.1 473 P47746 473 100% 0 0
NP_001352810.1 473 P47746 473 100% 0 0
NP_031752.1 473 P47746 473 100% 0 0

Chromosomal Locations for CCDS 18025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 33943614 33945035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGAAGTCGATCTTAGACGGCCTTGCAGATACCACCTTCCGTACCATCACCACAGACCTCCTCTACGTGG
GCTCAAATGACATTCAGTACGAAGATATCAAAGGAGACATGGCATCCAAATTAGGATACTTCCCACAGAA
ATTCCCTCTAACTTCCTTCAGGGGTAGTCCCTTCCAAGAAAAGATGACGGCAGGAGACAACTCCCCGTTG
GTTCCAGCAGGAGACACAACCAACATTACAGAGTTCTATAACAAGTCTCTCTCATCGTTCAAGGAGAACG
AGGACAACATCCAGTGTGGGGAGAATTTTATGGACATGGAGTGCTTCATGATTCTGAATCCCAGCCAGCA
GCTGGCCATCGCTGTCCTGTCCCTCACCCTGGGCACCTTCACGGTTCTGGAGAACCTGCTGGTGCTATGT
GTCATCCTTCACTCCCGCAGTCTCCGATGCAGGCCTTCCTACCACTTCATTGGCAGCCTGGCGGTGGCCG
ATCTCCTGGGAAGTGTCATCTTTGTCTACAGCTTTGTTGACTTCCACGTGTTCCACCGCAAAGATAGTCC
CAATGTGTTTCTGTTCAAACTGGGTGGGGTTACCGCCTCCTTCACAGCATCTGTGGGCAGCCTGTTCCTC
ACGGCCATCGACAGGTACATATCCATTCACAGGCCTCTGGCCTATAAGAGGATCGTCACCAGGCCCAAGG
CCGTAGTGGCCTTTTGCTTGATGTGGACTATTGCAATAGTAATTGCTGTGTTGCCTCTCCTGGGCTGGAA
CTGCAAGAAGCTGCAATCTGTTTGCTCAGACATCTTCCCACTCATTGATGAAACCTACCTGATGTTCTGG
ATCGGAGTCACCAGTGTGCTGTTGCTGTTCATTGTGTATGCATACATGTACATTCTCTGGAAGGCTCACA
GCCACGCAGTTCGCATGATCCAGCGTGGAACCCAGAAAAGCATCATCATTCACACCTCAGAAGATGGCAA
GGTGCAGGTGACACGGCCTGACCAAGCCCGCATGGACATTAGGCTGGCCAAAACCCTGGTTCTGATCCTG
GTGGTGTTGATCATCTGCTGGGGCCCTCTGCTTGCGATCATGGTGTATGATGTCTTTGGGAAGATGAACA
AGCTTATCAAGACGGTGTTTGCCTTCTGTAGTATGCTCTGCCTGCTGAACTCCACCGTGAACCCCATCAT
CTATGCTCTGAGGAGCAAGGACCTGAGACATGCTTTCCGCAGCATGTTCCCTTCATGTGAAGGCACTGCG
CAGCCTCTAGATAACAGCATGGGGGACTCAGACTGCCTGCACAAGCACGCCAATAACACAGCCAGCATGC
ACAGGGCCGCGGAAAGCTGCATCAAGAGCACTGTTAAGATCGCCAAGGTGACCATGTCTGTGTCCACAGA
CACGTCTGCCGAGGCTCTGTGA

Translation (473 aa):
MKSILDGLADTTFRTITTDLLYVGSNDIQYEDIKGDMASKLGYFPQKFPLTSFRGSPFQEKMTAGDNSPL
VPAGDTTNITEFYNKSLSSFKENEDNIQCGENFMDMECFMILNPSQQLAIAVLSLTLGTFTVLENLLVLC
VILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFVDFHVFHRKDSPNVFLFKLGGVTASFTASVGSLFL
TAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGWNCKKLQSVCSDIFPLIDETYLMFW
IGVTSVLLLFIVYAYMYILWKAHSHAVRMIQRGTQKSIIIHTSEDGKVQVTRPDQARMDIRLAKTLVLIL
VVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSCEGTA
QPLDNSMGDSDCLHKHANNTASMHRAAESCIKSTVKIAKVTMSVSTDTSAEAL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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