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Report for CCDS23780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23780.1 Public Mus musculus 10 Col10a1 23 108 98 CCDS HistoryNCBI Gene:12813Re-query CCDS DB by CCDS ID:23780.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105511.1 ENSMUSP00000101150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105511.1Link to Ensembl Protein Viewer:ENSMUSP00000101150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105511Re-query CCDS DB by Protein ID:ENSMUSP00000101150
Original member Current member NCBI NM_009925.4 NP_034055.1 Accepted alive Link to Nucleotide Sequence:NM_009925.4Link to Protein Sequence:NP_034055.1Re-query CCDS DB by Nucleotide ID:NM_009925Re-query CCDS DB by Protein ID:NP_034055Link to BLAST:NP_034055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034055.1 680 Q05306 680 100% 0 0

Chromosomal Locations for CCDS 23780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 34390622 34390775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34394188 34396076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGCTGCCTCAAATACCCTTTCTGCTGCTAATGTTCTTGACCCTGGTTCATGGGATGTTTTATGCTGAAC
GGTACCAAACGCCCACAGGCATAAAGGGCCCACTTGCTAGCCCCAAGACACAATACTTCATCCCATACGC
CATAAAGAGTAAAGGGATTCCAGTAAGAGGAGAACAAGGCATTCCTGGTCCACCAGGCCCAACCGGACCT
CGAGGACACCCAGGTCCCTCAGGACCGCCAGGCAAGCCAGGCTATGGAAGTCCTGGACTCCAAGGAGAGC
CAGGGTTGCCAGGACCACCAGGAATATCAGCCACGGGGAAGCCAGGCCTGCCAGGCCCGCCAGGCAAACC
AGGGGAGAGAGGACCATATGGACACAAAGGAGATATTGGCCCAGCTGGCTTACCCGGACCTCGGGGCCCT
CCAGGGCCCCCTGGAATTCCTGGCCCAGCTGGAATTTCTGTGCCAGGAAAACCTGGACAGCAGGGACTTA
CAGGTGCCCCAGGACCTAGGGGCTTTCCTGGAGAGAAGGGTGCACAAGGAGCCCCTGGTGTGAATGGGCG
GAAAGGGGAAACAGGATATGGCTCTCCTGGCCGTCCAGGTGAGAGGGGTCTTCCAGGCCCTCAAGGTCCC
ATAGGACCCCCTGGCCCCTCTGGAGTGGGAAGAAGAGGTGAAAACGGCTTTCCAGGACAGCCGGGCATCA
AAGGTGACCGGGGTTTCCCAGGAGAAATGGGACCATCAGGTCCACCAGGTCCCCAAGGTCCTCCCGGGAA
GCAAGGACGAGAAGGTATTGGGAAGCCAGGAGCCATTGGATCCCCTGGTCAGCCAGGTATCCCAGGAGAA
AAAGGCCACCCAGGGGCTCCAGGAATAGCTGGTCCTCCAGGAGCTCCTGGCTTTGGAAAACAAGGCTTGC
CAGGTTTGAGGGGACAAAGGGGACCTGCTGGTCTTCCTGGGGCTCCAGGTGCCAAAGGGGAACGAGGGCC
AGCAGGTCATCCTGGAGAACCGGGTCTGCCTGGATCCCCTGGGAATATGGGACCCCAAGGACCTAAAGGA
ATCCCAGGGAACCATGGCATTCCAGGCGCTAAAGGTGAGATAGGTCTAGTTGGGCCTGCAGGCCCCCCTG
GGGCTAGAGGAGCAAGGGGTCCACCTGGGTTAGATGGAAAAACAGGGTATCCTGGGGAGCCAGGTCTCAA
TGGTCCTAAGGGTAACCCAGGGTTACCAGGACAAAAAGGTGATCCTGGAGTGGGAGGAACCCCTGGTCTT
CGAGGTCCTGTTGGCCCTGTAGGAGCTAAAGGAGTGCCTGGACACAATGGTGAGGCAGGTCCAAGAGGTG
AACCTGGAATACCAGGTACCAGGGGCCCCACTGGGCCACCAGGTGTCCCAGGATTCCCTGGATCTAAGGG
TGACCCTGGAAACCCAGGTGCTCCAGGCCCAGCTGGCATAGCAACTAAGGGCCTCAATGGGCCCACTGGT
CCTCCAGGCCCTCCTGGTCCAAGAGGCCACAGTGGAGAACCTGGTCTCCCAGGTCCTCCGGGTCCCCCAG
GACCCCCCGGCCAAGCAGTCATGCCTGATGGCTTCATAAAGGCAGGCCAGAGGCCCAGGCTTTCTGGGAT
GCCGCTTGTCAGTGCTAACCACGGGGTAACAGGTATGCCCGTGTCTGCTTTTACTGTCATTCTCTCTAAA
GCTTACCCAGCAGTAGGTGCCCCCATCCCATTTGATGAGATTCTGTACAATAGGCAGCAGCATTACGACC
CAAGATCTGGTATCTTTACCTGTAAGATCCCAGGCATATACTATTTCTCCTACCACGTGCATGTGAAAGG
GACTCACGTTTGGGTAGGCCTGTATAAGAACGGCACGCCTACGATGTACACGTATGATGAGTACAGCAAA
GGCTACCTGGATCAGGCTTCAGGGAGTGCAATCATGGAGCTCACAGAAAATGACCAGGTATGGCTCCAAT
TGCCCAATGCAGAATCAAACGGCCTCTACTCCTCTGAGTACGTCCACTCGTCCTTCTCAGGATTCCTAGT
GGCTCCCATGTGA

Translation (680 aa):
MLPQIPFLLLMFLTLVHGMFYAERYQTPTGIKGPLASPKTQYFIPYAIKSKGIPVRGEQGIPGPPGPTGP
RGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGISATGKPGLPGPPGKPGERGPYGHKGDIGPAGLPGPRGP
PGPPGIPGPAGISVPGKPGQQGLTGAPGPRGFPGEKGAQGAPGVNGRKGETGYGSPGRPGERGLPGPQGP
IGPPGPSGVGRRGENGFPGQPGIKGDRGFPGEMGPSGPPGPQGPPGKQGREGIGKPGAIGSPGQPGIPGE
KGHPGAPGIAGPPGAPGFGKQGLPGLRGQRGPAGLPGAPGAKGERGPAGHPGEPGLPGSPGNMGPQGPKG
IPGNHGIPGAKGEIGLVGPAGPPGARGARGPPGLDGKTGYPGEPGLNGPKGNPGLPGQKGDPGVGGTPGL
RGPVGPVGAKGVPGHNGEAGPRGEPGIPGTRGPTGPPGVPGFPGSKGDPGNPGAPGPAGIATKGLNGPTG
PPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPDGFIKAGQRPRLSGMPLVSANHGVTGMPVSAFTVILSK
AYPAVGAPIPFDEILYNRQQHYDPRSGIFTCKIPGIYYFSYHVHVKGTHVWVGLYKNGTPTMYTYDEYSK
GYLDQASGSAIMELTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLVAPM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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