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Report for CCDS2453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2453.1 Public Homo sapiens 2 SGPP2 24 110 108 CCDS HistoryNCBI Gene:130367Re-query CCDS DB by CCDS ID:2453.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321276.8 ENSP00000315137.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321276.8Link to Ensembl Protein Viewer:ENSP00000315137.7Re-query CCDS DB by Nucleotide ID:ENST00000321276Re-query CCDS DB by Protein ID:ENSP00000315137
Original member Current member NCBI NM_152386.4 NP_689599.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152386.4Link to Protein Sequence:NP_689599.2Re-query CCDS DB by Nucleotide ID:NM_152386Re-query CCDS DB by Protein ID:NP_689599Link to BLAST:NP_689599.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689599.2 399 Q8IWX5-1 399 100% 0 0

Chromosomal Locations for CCDS 2453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 222424603 222424821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222474568 222474726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222521767 222521946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222524944 222525033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222558347 222558898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGCCGAGCTGCTGCGGAGCCTGCAGGATTCCCAGCTCGTCGCCCGCTTCCAGCGCCGCTGCGGGCTCT
TCCCCGCTCCGGATGAAGGCCCCCGGGAGAACGGCGCGGACCCCACGGAGCGCGCGGCGCGGGTCCCCGG
GGTCGAGCATCTCCCCGCAGCCAACGGCAAGGGCGGCGAGGCTCCGGCCAACGGGCTGCGCAGAGCCGCG
GCGCCGGAGGCTTATGTACAGAAGTACGTCGTGAAGAATTATTTCTACTATTACCTATTCCAATTTTCAG
CTGCTTTGGGCCAAGAAGTGTTCTACATCACGTTTCTTCCATTCACTCACTGGAATATTGACCCTTATTT
ATCCAGAAGATTGATCATCATATGGGTTTTGGTGATGTATATTGGCCAAGTGGCCAAGGATGTCTTGAAG
TGGCCCCGTCCCTCCTCCCCTCCAGTTGTAAAACTGGAAAAGAGACTGATCGCTGAATATGGAATGCCAT
CCACCCACGCCATGGCGGCCACTGCCATTGCCTTCACCCTCCTTATCTCTACTATGGACAGATACCAGTA
TCCATTTGTGTTGGGACTGGTGATGGCCGTGGTGTTTTCCACCTTGGTGTGTCTCAGCAGGCTCTACACT
GGGATGCATACGGTCCTGGATGTGCTGGGTGGCGTCCTGATCACCGCACTCCTCATCGTCCTCACCTACC
CTGCCTGGACCTTCATCGACTGCCTGGACTCGGCCAGCCCCCTCTTCCCCGTGTGTGTCATAGTTGTGCC
ATTCTTCCTGTGTTACAATTACCCTGTTTCTGATTACTACAGCCCAACCCGGGCGGACACCACCACCATT
CTGGCTGCCGGGGCTGGAGTGACCATAGGATTCTGGATCAACCATTTCTTCCAGCTTGTATCCAAGCCCG
CTGAATCTCTCCCTGTTATTCAGAACATCCCACCACTCACCACCTACATGTTAGTTTTGGGTCTGACCAA
ATTTGCAGTGGGAATTGTGTTGATCCTCTTGGTTCGTCAGCTTGTACAAAATCTCTCACTGCAAGTATTA
TACTCATGGTTCAAGGTGGTCACCAGGAACAAGGAGGCCAGGCGGAGACTGGAGATTGAAGTGCCTTACA
AGTTTGTTACCTACACATCTGTTGGCATCTGCGCTACAACCTTTGTGCCGATGCTTCACAGGTTTCTGGG
ATTACCCTGA

Translation (399 aa):
MAELLRSLQDSQLVARFQRRCGLFPAPDEGPRENGADPTERAARVPGVEHLPAANGKGGEAPANGLRRAA
APEAYVQKYVVKNYFYYYLFQFSAALGQEVFYITFLPFTHWNIDPYLSRRLIIIWVLVMYIGQVAKDVLK
WPRPSSPPVVKLEKRLIAEYGMPSTHAMAATAIAFTLLISTMDRYQYPFVLGLVMAVVFSTLVCLSRLYT
GMHTVLDVLGGVLITALLIVLTYPAWTFIDCLDSASPLFPVCVIVVPFFLCYNYPVSDYYSPTRADTTTI
LAAGAGVTIGFWINHFFQLVSKPAESLPVIQNIPPLTTYMLVLGLTKFAVGIVLILLVRQLVQNLSLQVL
YSWFKVVTRNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRFLGLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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