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Report for CCDS2188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2188.1 Public Homo sapiens 2 LYPD6 24 110 108 CCDS HistoryNCBI Gene:130574Re-query CCDS DB by CCDS ID:2188.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2188.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334166.9 ENSP00000334463.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334166.9Link to Ensembl Protein Viewer:ENSP00000334463.4Re-query CCDS DB by Nucleotide ID:ENST00000334166Re-query CCDS DB by Protein ID:ENSP00000334463
Original member Current member EBI ENST00000409381.5 ENSP00000386413.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409381.5Link to Ensembl Protein Viewer:ENSP00000386413.1Re-query CCDS DB by Nucleotide ID:ENST00000409381Re-query CCDS DB by Protein ID:ENSP00000386413
Original member Current member EBI ENST00000651933.1 ENSP00000498455.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651933.1Link to Ensembl Protein Viewer:ENSP00000498455.1Re-query CCDS DB by Nucleotide ID:ENST00000651933Re-query CCDS DB by Protein ID:ENSP00000498455
Original member Current member NCBI NM_001195685.2 NP_001182614.1 Accepted alive Link to Nucleotide Sequence:NM_001195685.2Link to Protein Sequence:NP_001182614.1Re-query CCDS DB by Nucleotide ID:NM_001195685Re-query CCDS DB by Protein ID:NP_001182614Link to BLAST:NP_001182614.1
Original member Current member NCBI NM_194317.5 NP_919298.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194317.5Link to Protein Sequence:NP_919298.1Re-query CCDS DB by Nucleotide ID:NM_194317Re-query CCDS DB by Protein ID:NP_919298Link to BLAST:NP_919298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182614.1 171 Q86Y78-1 171 100% 0 0
NP_919298.1 171 Q86Y78-1 171 100% 0 0

Chromosomal Locations for CCDS 2188.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 149437709 149437826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149449049 149449147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149468645 149468775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149470683 149470850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGAACCTGGCCCTGCTCTGGCCTGGCTCCTGCTCCTGAGCCTGCTGGCGGATTGTCTGAAAGCTGCTC
AGTCCCGAGACTTCACAGTGAAAGACATTATCTACCTCCATCCTTCAACCACACCATATCCTGGTGGATT
TAAATGTTTCACCTGTGAAAAGGCAGCAGACAATTATGAGTGCAACCGATGGGCTCCAGACATCTACTGC
CCTCGAGAGACCAGATACTGCTACACTCAGCACACAATGGAAGTCACAGGAAACAGTATCTCAGTCACCA
AACGCTGTGTCCCACTGGAAGAGTGCTTATCCACTGGCTGCAGAGACTCCGAGCATGAAGGCCACAAGGT
CTGCACTTCTTGTTGTGAAGGAAATATCTGTAACTTGCCACTGCCCCGAAATGAAACTGATGCCACATTT
GCCACGACGTCACCTATAAATCAGACAAATGGGCACCCACGCTGTATGTCAGTGATAGTGTCCTGCTTGT
GGTTGTGGTTAGGGCTCATGTTATAG

Translation (171 aa):
MEPGPALAWLLLLSLLADCLKAAQSRDFTVKDIIYLHPSTTPYPGGFKCFTCEKAADNYECNRWAPDIYC
PRETRYCYTQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGHKVCTSCCEGNICNLPLPRNETDATF
ATTSPINQTNGHPRCMSVIVSCLWLWLGLML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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