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Report for CCDS17266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17266.1 Public Mus musculus 3 Tbl1xr1 23 108 98 CCDS HistoryNCBI Gene:81004Re-query CCDS DB by CCDS ID:17266.1Re-query CCDS DB by GeneID:81004See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063988.13 ENSMUSP00000067164.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063988.13Link to Ensembl Protein Viewer:ENSMUSP00000067164.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000063988Re-query CCDS DB by Protein ID:ENSMUSP00000067164
Original member Current member EBI ENSMUST00000192328.4 ENSMUSP00000141363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192328.4Link to Ensembl Protein Viewer:ENSMUSP00000141363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192328Re-query CCDS DB by Protein ID:ENSMUSP00000141363
Original member Current member EBI ENSMUST00000193734.5 ENSMUSP00000142184.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193734.5Link to Ensembl Protein Viewer:ENSMUSP00000142184.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193734Re-query CCDS DB by Protein ID:ENSMUSP00000142184
Original member Current member EBI ENSMUST00000202747.3 ENSMUSP00000144436.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202747.3Link to Ensembl Protein Viewer:ENSMUSP00000144436.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202747Re-query CCDS DB by Protein ID:ENSMUSP00000144436
Original member Current member NCBI NM_030732.3 NP_109657.2 Accepted alive Link to Nucleotide Sequence:NM_030732.3Link to Protein Sequence:NP_109657.2Re-query CCDS DB by Nucleotide ID:NM_030732Re-query CCDS DB by Protein ID:NP_109657Link to BLAST:NP_109657.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109657.2 514 Q8BHJ5 514 100% 0 0

Chromosomal Locations for CCDS 17266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 22179248 22179305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22188366 22188511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22189768 22189990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22190915 22191047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22191392 22191533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22192020 22192083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22192170 22192267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22193108 22193168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22200320 22200441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22200590 22200664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22203097 22203224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22203827 22203992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22209512 22209613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 22210401 22210427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGAGTATAAGCAGTGATGAGGTCAACTTCTTGGTATATAGGTACTTGCAAGAGTCAGGATTTTCTCATT
CTGCGTTTACCTTTGGTATAGAGAGCCATATAAGTCAGTCCAACATAAATGGTGCCCTGGTTCCACCCGC
TGCACTCATCTCTATCATCCAGAAAGGCCTGCAGTATGTAGAGGCAGAAGTTAGCATAAATGAGGATGGC
ACCTTATTTGATGGTCGACCCATCGAGTCTCTGTCCCTGATAGATGCTGTTATGCCCGATGTAGTCCAAA
CAAGACAACAAGCCTACAGAGACAAGCTTGCACAGCAGCATGCAGCCGCAGCCGCTGCCGCTGCTGCCGC
CACTAACCAGCAAGGATCTGCAAAAAATGGAGAGAATACAGCAAATGGGGAGGAGAATGGAGCACATACC
ATCGCAAATAATCACACTGACATGATGGAAGTAGATGGGGATGTGGAAATCCCTTCCAATAAAGCGGTTG
TGCTTCGGGGCCATGAATCTGAAGTTTTCATCTGTGCCTGGAACCCTGTTAGTGATCTCCTGGCATCAGG
GTCTGGAGACTCCACGGCAAGAATCTGGAACCTCAGTGAGAACAGCACGAGTGGCCCTACGCAGCTCGTG
CTTAGACACTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGA
ATAGTGAAGGTACACTTCTAGCAACTGGGTCATATGATGGATTTGCCAGAATATGGACTAAAGATGGTAA
TCTTGCCAGCACCTTGGGGCAGCATAAAGGTCCTATATTTGCATTAAAATGGAATAAGAAAGGAAATTTC
ATCCTAAGTGCTGGCGTAGATAAGACCACCATCATTTGGGATGCGCATACTGGTGAAGCCAAGCAGCAGT
TTCCTTTCCATTCAGCCCCAGCATTGGATGTTGACTGGCAGAGCAACAACACCTTTGCATCTTGTAGTAC
AGATATGTGCATTCACGTCTGCAAATTAGGACAAGACAGACCTATCAAAACATTCCAGGGACACACGAAT
GAAGTAAATGCTATCAAATGGGACCCAACTGGCAATCTCCTAGCCTCCTGTTCAGATGACATGACATTGA
AGATCTGGAGTATGAAGCAAGATAACTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTAT
TAAGTGGAGTCCAACAGGACCAGGGACAAATAATCCAAATGCCAACCTTATGCTAGCAAGTGCATCCTTT
GATTCTACAGTTAGGTTATGGGACGTAGACAGAGGGATTTGCATCCATACTTTGACAAAACATCAAGAGC
CCGTGTACAGTGTGGCTTTTAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGACAAGTGTGTGCA
CATCTGGAACACACAGACAGGTGCTCTAGTTCACAGTTACAGGGGAACAGGTGGAATTTTTGAAGTTTGC
TGGAACGCAGCAGGAGACAAAGTTGGAGCCAGTGCTTCGGACGGTTCAGTTTGTGTCTTAGACCTTCGGA
AATAG

Translation (514 aa):
MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDG
TLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQHAAAAAAAAAATNQQGSAKNGENTANGEENGAHT
IANNHTDMMEVDGDVEIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQLV
LRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNF
ILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTN
EVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASF
DSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVC
WNAAGDKVGASASDGSVCVLDLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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