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Report for CCDS40360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40360.1 Public Mus musculus 8 Zfp869 23 108 98 CCDS HistoryNCBI Gene:66869Re-query CCDS DB by CCDS ID:40360.1Re-query CCDS DB by GeneID:66869See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080987.6 ENSMUSP00000079780.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080987.6Link to Ensembl Protein Viewer:ENSMUSP00000079780.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080987Re-query CCDS DB by Protein ID:ENSMUSP00000079780
Original member Current member EBI ENSMUST00000238408.1 ENSMUSP00000158615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238408.1Link to Ensembl Protein Viewer:ENSMUSP00000158615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238408Re-query CCDS DB by Protein ID:ENSMUSP00000158615
Original member Current member EBI ENSMUST00000238657.1 ENSMUSP00000158663.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238657.1Link to Ensembl Protein Viewer:ENSMUSP00000158663.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238657Re-query CCDS DB by Protein ID:ENSMUSP00000158663
Original member Current member EBI ENSMUST00000238753.1 ENSMUSP00000158685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238753.1Link to Ensembl Protein Viewer:ENSMUSP00000158685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238753Re-query CCDS DB by Protein ID:ENSMUSP00000158685
Original member Current member EBI ENSMUST00000238418.1 ENSMUSP00000158786.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238418.1Link to Ensembl Protein Viewer:ENSMUSP00000158786.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238418Re-query CCDS DB by Protein ID:ENSMUSP00000158786
Original member Current member EBI ENSMUST00000238292.1 ENSMUSP00000158827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238292.1Link to Ensembl Protein Viewer:ENSMUSP00000158827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238292Re-query CCDS DB by Protein ID:ENSMUSP00000158827
Original member Current member NCBI NM_001039965.1 NP_001035054.1 Accepted alive Link to Nucleotide Sequence:NM_001039965.1Link to Protein Sequence:NP_001035054.1Re-query CCDS DB by Nucleotide ID:NM_001039965Re-query CCDS DB by Protein ID:NP_001035054Link to BLAST:NP_001035054.1
Original member Current member NCBI NM_001039967.1 NP_001035056.1 Accepted alive Link to Nucleotide Sequence:NM_001039967.1Link to Protein Sequence:NP_001035056.1Re-query CCDS DB by Nucleotide ID:NM_001039967Re-query CCDS DB by Protein ID:NP_001035056Link to BLAST:NP_001035056.1
Original member Current member NCBI NM_001359086.1 NP_001346015.1 Accepted alive Link to Nucleotide Sequence:NM_001359086.1Link to Protein Sequence:NP_001346015.1Re-query CCDS DB by Nucleotide ID:NM_001359086Re-query CCDS DB by Protein ID:NP_001346015Link to BLAST:NP_001346015.1
Original member Current member NCBI NM_001359087.1 NP_001346016.1 Accepted alive Link to Nucleotide Sequence:NM_001359087.1Link to Protein Sequence:NP_001346016.1Re-query CCDS DB by Nucleotide ID:NM_001359087Re-query CCDS DB by Protein ID:NP_001346016Link to BLAST:NP_001346016.1
Original member Current member NCBI NM_181274.4 NP_851791.1 Accepted alive Link to Nucleotide Sequence:NM_181274.4Link to Protein Sequence:NP_851791.1Re-query CCDS DB by Nucleotide ID:NM_181274Re-query CCDS DB by Protein ID:NP_851791Link to BLAST:NP_851791.1

Chromosomal Locations for CCDS 40360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69706332 69707694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69708111 69708171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69708339 69708465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69710686 69710724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGAGGCAGCCATTGTTGGACTCTCCAGGCCTGATGAGGGTTTGGTGAGCTTTGAGGATCTGGTGGTGC
ACTTCACCCAGGATGAGTGGGATTTGCTGGCTCCTTCCCAGAAGACTCTCTACGGAGATGTGATGCTGGA
GACCTTCAGGAACTTCACTGCCGTAGGATATGAATGGGAAGATGAGGCAATTGAAGACCATTGTGAAGAT
CCTGAAGTAAATCTAAGGAACATCGTCACTCACTCTGAATACACACAGTATGAACACGAGGAATATGAAG
AGAAGCCACCTGATTCTAATTTTCTCACAAGTGTTGAAGGCCTTGAGGAAACTAAGACTTCGAGTGGACC
GTCTGTGTGTGAGGTATGTTTAAAGACCTTTGGACTGTACCACCTAACTTACAACGGACATCACAACTAT
GACTACAAGGAGCTCAGAGGAGGCCACACTGAAGAAAATGATTCTGAAGGTAACCAGTGTGAGAAAACTT
CCGGTTCCCTTCAGAAAGAAGACAAAATTCATACTGGAAAAAAACTCTATGTGTGTCAAGAGTGTGGTAA
AGCCTTTAGGTATCCCAGCGCCCTTCAGTTACATGAAAGAATTCATACTGGAGAAAAACCCTACGAGTGT
AAAGACTGTGGGAAAGCCTTTAGAGGTCTTAGTGCCCTTCACTTACATGAAAGAATCCATACTGGAGAAA
AACCCTACGAGTGTAAGCAGTGTGGGAGAGCCTTCACGTATCTCAGTGCTCTTCAGTTGCATGAAAGAAT
TCACACTGAGGAGAGGCCCTGTGAGTGTAAACAGTGTGGGAAAACCTTTAGATATAGCAGGGCCCTCAAA
TTACATGAAAGAATTCATACCGGAGAGAAGCCCTATGAATGTAAACAATGTGGGAAATTTTTCAGAAGTC
ACAGGACCCTTAAGTTACATAAAAGAATTCATACTGGAGAAAAACCCTATGAGTGTAAAGAATGTGGGAA
AGCTTTTAGATGGCTTACTTCTCTGAAGTTACATGAAAAGATTCATACTGGAGAAAAACCGTATGAATGC
CAAGAGTGTGGGAAAGCCTTCAGGTGTCAGGCGTCCTATCATAGACATAAAATAACTCATGGTGGAGAAA
CATTGTATGAATGTAAGGAGTGTGGGAAGTCCTTCATTTATCCCTCTTTACTTCAAGTGCATGAAAGAAC
TCACACTGGTGAAAAGCCCTTTGAGTGTAAGCTCTGCGGTAAAGCCTTTAGGTGTCAGTCCTCGCTTCGA
CTGCACGAGAGAACACACACAGGAGAAAAACCCTATGAGTGTAAGCACTGTGGCAAAGCCTTTTCAAGTT
ACAATTACCTTCGATTTCACGAACGAAGCCACACTGGAGAGAAACCCTATGAATGTAAGGAGTGTGGTAA
AACTTTCACACATCGCTCTTACCTTCGATCACATGAAAGAAGACATACTGGGGAGAAGCCGTACCAGTGC
GGACAGTGTGGCAGATCCTTCAGCAGGCACAGTTCCTTTAAGAGACATCAGTCAGTTCATGGAGAAAGCC
CATATGAACAGTATCTAATTCCATTATCCCCATTTCCTTCAAAGGAATGA

Translation (529 aa):
MEAAIVGLSRPDEGLVSFEDLVVHFTQDEWDLLAPSQKTLYGDVMLETFRNFTAVGYEWEDEAIEDHCED
PEVNLRNIVTHSEYTQYEHEEYEEKPPDSNFLTSVEGLEETKTSSGPSVCEVCLKTFGLYHLTYNGHHNY
DYKELRGGHTEENDSEGNQCEKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYEC
KDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALK
LHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYEC
QECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLR
LHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQC
GQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFPSKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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