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Report for CCDS78706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78706.1 Public Mus musculus 1 Dhx9 23 108 98 CCDS HistoryNCBI Gene:13211Re-query CCDS DB by CCDS ID:78706.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186380.6 ENSMUSP00000139825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186380.6Link to Ensembl Protein Viewer:ENSMUSP00000139825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186380Re-query CCDS DB by Protein ID:ENSMUSP00000139825
Original member NCBI NM_007842.2 NP_031868.2 Updated not alive Link to Nucleotide Sequence:NM_007842.2Link to Protein Sequence:NP_031868.2Re-query CCDS DB by Nucleotide ID:NM_007842Re-query CCDS DB by Protein ID:NP_031868
Current member NCBI NM_007842.3 NP_031868.2 Accepted alive Link to Nucleotide Sequence:NM_007842.3Link to Protein Sequence:NP_031868.2Re-query CCDS DB by Nucleotide ID:NM_007842Re-query CCDS DB by Protein ID:NP_031868Link to BLAST:NP_031868.2

Chromosomal Locations for CCDS 78706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153456069 153456753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153457531 153457731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153458053 153458168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153458260 153458489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153459338 153459465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153459558 153459719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153460278 153460389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153460982 153461142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153462552 153462704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153464340 153464413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153464618 153464712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153464855 153465068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153465677 153465777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153467032 153467188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153468874 153468956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153469600 153469741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153471620 153471811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153472226 153472303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153472401 153472562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153472672 153472761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153473147 153473283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153475663 153475709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153478041 153478189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153478866 153478978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153481132 153481249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153482742 153482882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153483740 153483850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4152 nt):
ATGGGTGACATTAAAAATTTTCTGTATGCCTGGTGTGGCAAAAGGAAGATGACTCCAGCCTATGAAATTA
GAGCAGTAGGAAACAAAAACAGACAGAAATTCATGTGTGAGGTTCGAGTAGAAGGGTTTAATTATGCTGG
TATGGGCAATTCCACCAATAAAAAGGATGCACAGAGCAATGCTGCCAGAGACTTTGTTAACTATTTGGTT
CGAATAAATGAAGTAAAGAGTGAAGAAGTTCCAGCTGTTGGGATTGTACCACCCCCACCCATACTTAGCG
ACACCTCTGATAGCACAGCAAGTGCTGCAGAAGGGTTACCAGCACCAATGGGAGGACCACTTCCTCCTCA
TCTGGCTCTCAAAGCAGAAGAAAATAATTCTGGAGTTGAGTCTTCTGGCTATGGCTCTCCTGGACCTACT
TGGGACCGAGGAGCCAACCTTAAAGATTACTACTCAAGAAAGGAAGAACAAGAAGTACAAGCGACTCTAG
AGTCAGAAGAAGTGGATTTAAATGCTGGGCTTCATGGAAATTGGACACTGGAAAATGCTAAGGCTCGTCT
GAACCAGTATTTCCAAAAAGAAAAGATCCAAGGAGAATATAAGTACACCCAAGTGGGTCCCGACCACAAC
AGGAGCTTTATTGCAGAAATGACCATTTATATCAAGCAGCTTGGCAGAAGGATTTTCGCACGTGAACATG
GATCTAATAAGAAATTAGCAGCACAGTCATGTGCCCTCTCACTTGTCCGACAGCTCTATCATCTTGGAGT
GATTGAGGCTTACTCTGGGCTTACAAAGAAGAAAGAAGGAGAGAGAGTGGAGCCTTACAAAGTTTTCCTT
TCTCCAGATTTGGAGCTTCAGCTGCAAAATGTGGTTCAAGAGCTAGATCTTGAAATTGTGCCCCCACCTG
TTGATCCTTCTATGCCAGTTATACTTAACATTGGGAAATTGGCTCATTTTGAACCATCTCAGAGACAAAA
TGCAGTGGGAGTGGTTCCTTGGTCACCTCCACAATCCAACTGGAATCCTTGGACAAGTAGCAACATTGAT
GAGGGACCCCTTGCTTATGCTTCTACAGAACAAATAAGCATGGACCTTAAGAATGAATTAACATACCAGA
TGGAACAAGATCATAATTTACAAAGTGTGTTACAAGAGAGAGAGTTGCTGCCTGTGAAGAAATTTGAAGC
TGAAATTCTGGAAGCCATTAGTTCAAATTCAGTTGTGATTATCCGAGGGGCTACTGGTTGTGGTAAAACC
ACACAAGTTCCACAGTACATTTTGGATGACTTTATCCAGAATGACAGAGCAGCCGAATGCAATATTGTTG
TGACACAGCCCAGAAGGATCAGTGCAGTTGCAGTGGCAGAGCGAGTTGCTTATGAGAGAGGAGAAGAGCC
TGGAAAAAGCTGTGGTTACAGTGTTCGATTTGAGTCTATACTTCCACGCCCTCATGCCAGTATAATGTTT
TGTACTGTAGGTGTGCTTCTAAGAAAACTAGAAGCCGGCATTCGAGGAATCAGTCATGTTATTGTGGATG
AAATTCATGAAAGAGATATTAATACTGACTTCCTTTTGGTAGTACTGCGTGATGTGGTTTTGGCTTATCC
TGAAGTCCGTATTGTTCTTATGTCTGCAACTATTGATACCACCATGTTCTGTGAATATTTCTTCAATTGC
CCCATCATTGAGGTTTATGGAAGGACTTTCCCAGTTCAAGAGTATTTTCTGGAAGACTGCATTCAGATGA
CTCAATTCATTCCTCCTCCAAAGGACAAGAAAAAGAAGGATAAGGAGGATGATGGTGGTGAAGATGATGA
TGCAAATTGCAACCTAATATGTGGTGACGAATATGGGCCAGAAACAAAGTTGAGCATGTCTCAGTTGAAT
GAAAAGGAAACTCCTTTTGAACTTATTGAGGCGCTTCTTAAATACATTGAAACCCTTAATGTTCCTGGAG
CTGTGTTGGTATTTTTACCTGGCTGGAACTTGATTTATACTATGCAAAAGCATTTAGAAAATAATTCGCA
TTTCGGAAGTCACCGGTATCAGATTCTACCTCTCCATTCTCAGATTCCTCGTGAGGAACAGCGCAAAGTG
TTTGATCCAGTACCAGATGGAGTAACCAAGGTTATTTTGTCCACAAACATTGCTGAAACAAGCATTACCA
TAAATGATGTTGTTTACGTCATTGACTCCTGCAAACAAAAAGTGAAACTATTTACTGCTCACAACAATAT
GACCAACTATGCTACTGTATGGGCATCAAAAACAAACCTTGAGCAGAGGAAAGGGCGAGCTGGCCGTGTA
CGACCTGGGTTCTGTTTCCACCTTTGTAGTCGAGCTCGTTTTGACAGACTAGAGACCCACATGACACCAG
AGATGTTTAGAACACCATTGCATGAAATTGCTCTGAGCATAAAACTTCTGCGTCTAGGAGGAATTGGCCA
ATTCCTTGCAAAGGCAATCGAACCTCCACCTTTGGATGCTGTAATTGAAGCAGAGCATACTCTAAGAGAA
CTTGATGCTTTAGATGCCAATGATGAGTTGACTCCTCTTGGACGAATCCTGGCTAAACTCCCCATTGAAC
CTCGTTTTGGAAAAATGATGATAATGGGGTGTATTTTCTATGTGGGAGATGCTGTCTGTACCATCTCTGC
TGCTACCTGCTTCCCAGAACCCTTTATCAGCGAAGGAAAACGCCTGGGATACATACACCGGAATTTTGCT
GGAAACAGATTTTCTGATCACGTGGCTCTTTTATCAGTATTCCAAGCCTGGGATGATGCTAGGATGAGTG
GAGAAGAAGCAGAAATACGTTTTTGTGAGCAGAAGAGACTCAATATGGCTACACTGAGAATGACTTGGGA
GGCCAAAGTACAGCTTAAAGAGATTCTGATTAACTCTGGATTTCCCGAAGATTGTTTATTGACACAAGTG
TTTACTAACACTGGACCAGATAATAATTTGGATGTTGTTATCTCTCTGCTGGCTTTTGGTGTGTACCCCA
ATGTATGCTATCATAAGGAGAAGAGAAAGATTCTTACCACTGAAGGGCGCAATGCACTTATCCACAAGTC
ATCTGTGAACTGTCCTTTCAGCAGCCAAGACATGAAGTACCCATCTCCTTTCTTTGTTTTTGGTGAAAAG
ATTAGAACCCGAGCCATCTCTGCTAAAGGCATGACCTTAGTGACCCCCTTACAGCTACTTCTCTTTGCCT
CCAAGAAAGTCCAGTCGGATGGGCAGATTGTGTTTATAGATGACTGGATCAGACTGCAAATATCTCATGA
AGCTGCAGCATGCATCACAGCCCTCCGGGCAGCCATGGAAGCTCTGGTTGTTGAAGTGTCCAAACAACCA
AATATTATCAGCCAATTGGACCCTGTAAATGAACATATGCTAAACACAATCCGACAGATTTCTAGGCCCT
CAGCTGCTGGTATCAACCTTATGATTGGAAGTGTAAGGTACGGCGATGGTCCACGACCTCCCAAGATGGC
CCGATATGATAATGGAAGTGGATATAGAAGGGGATATGGTGGGGGAGGATATGGTGGCGGAGGATATGGT
GGCGGATACGGTAGTGGAGGCTTTGGAGGAGGCTTTGGAAGTGGGGGAGGCTTTGGAGGAGGCTTTAACA
GCGGTGGGGGAGGCTTTGGTAGTGGTGGGGGAGGCTTTGGCAGTGGTGGAGGTGGATTTGGTGGTGGTGG
AGGAGGCTTCAGTGGTGGAGGAGGTGGTGGATTTGGTGGTGGCAGAGGAGGTGGAGGTGGCGGATTTGGG
GGTAGTGGGGGCTTTGGAAGTGGTGGGGGAGGGTATGGTGTTGGAGGTGGTGGCTATGGAGGAGGTGGTG
GTGGTGGCTATGGAGGAGGCAGTGGAGGATATGGAGGTGGGGGAGGGGGTTATGGTGGTGGGGAAGGTTA
TAGTATAAGCCCCAACTCTTACCGTGGGAATTATGGTGGTGGCGGGGGAGGGTATAGAGGAGGTTCCCAA
GGAGGCTACAGAAACAACTTTGGTGGAGACTACAGAGGGTCCAGTGGAGACTACCGGGGATCCGGTGGGG
GCTATAGAGGATCTGGAGGATTCCAGCGAAGGGGTTATGGAGGTGGTTATTTTGGACAAGGAAGAGGAGG
AGGGGGTGGTGGTGGCTATTAA

Translation (1383 aa):
MGDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLV
RINEVKSEEVPAVGIVPPPPILSDTSDSTASAAEGLPAPMGGPLPPHLALKAEENNSGVESSGYGSPGPT
WDRGANLKDYYSRKEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHN
RSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIEAYSGLTKKKEGERVEPYKVFL
SPDLELQLQNVVQELDLEIVPPPVDPSMPVILNIGKLAHFEPSQRQNAVGVVPWSPPQSNWNPWTSSNID
EGPLAYASTEQISMDLKNELTYQMEQDHNLQSVLQERELLPVKKFEAEILEAISSNSVVIIRGATGCGKT
TQVPQYILDDFIQNDRAAECNIVVTQPRRISAVAVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMF
CTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVLAYPEVRIVLMSATIDTTMFCEYFFNC
PIIEVYGRTFPVQEYFLEDCIQMTQFIPPPKDKKKKDKEDDGGEDDDANCNLICGDEYGPETKLSMSQLN
EKETPFELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLENNSHFGSHRYQILPLHSQIPREEQRKV
FDPVPDGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRV
RPGFCFHLCSRARFDRLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRE
LDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFISEGKRLGYIHRNFA
GNRFSDHVALLSVFQAWDDARMSGEEAEIRFCEQKRLNMATLRMTWEAKVQLKEILINSGFPEDCLLTQV
FTNTGPDNNLDVVISLLAFGVYPNVCYHKEKRKILTTEGRNALIHKSSVNCPFSSQDMKYPSPFFVFGEK
IRTRAISAKGMTLVTPLQLLLFASKKVQSDGQIVFIDDWIRLQISHEAAACITALRAAMEALVVEVSKQP
NIISQLDPVNEHMLNTIRQISRPSAAGINLMIGSVRYGDGPRPPKMARYDNGSGYRRGYGGGGYGGGGYG
GGYGSGGFGGGFGSGGGFGGGFNSGGGGFGSGGGGFGSGGGGFGGGGGGFSGGGGGGFGGGRGGGGGGFG
GSGGFGSGGGGYGVGGGGYGGGGGGGYGGGSGGYGGGGGGYGGGEGYSISPNSYRGNYGGGGGGYRGGSQ
GGYRNNFGGDYRGSSGDYRGSGGGYRGSGGFQRRGYGGGYFGQGRGGGGGGGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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