CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS50698.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
50698.1 |
Public |
Mus musculus |
2 |
Atp8b4 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:241633](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:50698.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:241633](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 50698.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000040128.11 |
ENSMUSP00000046444.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000040128.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000046444.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000040128](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000046444](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000040149.12 |
ENSMUSP00000047302.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000040149.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000047302.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000040149](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000047302](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001080944.3 |
NP_001074413.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001080944.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001074413.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001080944](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001074413](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001074413.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359975.1 |
NP_001346904.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359975.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001346904.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359975](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001346904](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001346904.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 50698.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3585 nt): ATGATGTTCTGCAATAAGAAGAAGCTACTTGAAGTGGAGCGGGTGGTGAAAGCCAATGACCGTGACTACA ATGAGAAGTTCCAGTATGCGGACAATCGTATCCATACGTCCAAGTACAACGTTCTCACATTTTTGCCAAT TAATTTATTTGAGCAGTTACAAAGAGTGGCAAATGCCTACTTTCTTTTCCTTCTGATACTACAGCTCATT CCAGAAATCTCTTCCCTGACATGGTTCACCACCATTGTGCCACTGGTCCTGGTGATCTCGATGACGGCTG TCAAGGATGCCACCGACGACTATTTCCGTCACAAGAGTGATAATCAAGTGAATAACCGGCAGTCTAAGGT GCTCATCAATAGCAAACTGCAGAATGAAAAATGGATGAATGTTAAAGTTGGAGACATCATTAAATTAGAA AACAACCAATTTGTCGCTGCTGACCTGCTGCTCCTGTCGAGCAGTGAGCCACACGGTCTCTGTTATGTTG AAACAGCTGAGCTTGACGGGGAAACAAACCTGAAGGTTCGTCAGGCACTACCTGTCACCTCAGAACTTGG AGCAGACATTAGCAGTCTTGCAGAGTTTGATGGGATCGTCAGGTGTGAGGCGCCTAACAACAAGTTAGAC AGATTCTCGGGGGTCCTCTCTTGGAAGGACAGCAAGCATGCCCTCAGCAACCAGAAGATAATCCTGAGAG GCTGCGTCCTGAGGAACACCAGCTGGTGCTTTGGAATGGTTCTTTTTGCAGGTCCAGACACTAAACTAAT GCAGAACAGTGGTAAGACAAAGTTTAAAAGGACAAGCATTGACAGACTGATGAATACCCTAGTCCTCTGG ATTTTTGGGTTTCTGGTATGCTTGGGAATTATTCTTGCAGTAGGAAGTTCAATCTTGGAGAGTGAAGTTG GGGACCAGTTCAGAACTCCCCCCTTCTGGAGAGAAGGCGAGAAGAGCTTCTTGTTCTCTGGATTCTTAAC ATTCTGGTCATATGTCATCATTCTCAACACGCTTGTGCCCATTTCATTATATGTGAGTGTGGAAGTAATC CGTCTGGGACACAGTTATTTTATAAACTGGGACCGGAAGATGTATTATGCTTCGAAAGCAATGCCTGCTG AAGCCCGGACGACCACTCTAAATGAGGAACTGGGCCAGATCGAATATATCTTCTCTGACAAAACAGGAAC TCTCACCCAAAACATCATGACTTTTAAAAAATGTTCCATTAATGGAAGAGTCTACGCAGGTGAAGTGCTA GATGACCCAATCCAGAAGAAAGAAATAACTAAGGAAAAGGAGGCTACGGACTTCTCAAGCAAGTCGAAAT CAGAAAAAACACTGCATTTCTTTGACCAGAGTCTAATGGAATCCATTGAGCTGGGGGACCCCAAAGTCCA TGAATTCCTTCGCTTACTCGCACTCTGCCATACTGTAATGTCAGAAGAGAACAGTGCAGGACAACTGGTT TACCAAGTTCAATCGCCTGATGAAGGAGCTCTAGTTACTGCTGCTAGAAATTTTGGGTTCATTTTTAAGT CTCGAACTCCAGAGACAATTACAATAGAAGAATTGGGAACACCGGTGACTTATCAGTTACTTGCCTTTTT GGATTTCAACAACATCCGGAAAAGGATGTCTGTCATAGTTCGAAACCCAGAAGGACGTATAAAACTTTAT TCCAAAGGGGCAGATACTATTTTGTTTGAAAAGCTCCATCCTTCCAATGAAGACCTGCAGTCCTTAACAT CAGACCATCTCAGCGAATTTGCAGGGGAAGGCCTCCGAACCTTGGCAATTGCTTATCGAGAGCTTGATGA CAAGTACTTTAAAATGTGGCAGAAGATGCTTGAAGATGCAAATTCTGCCACCTTGGAAAGGGATGAACGG ATATCTGGGCTGTATGAAGAAATCGAGAGGGATTTGATGCTATTAGGTGCCACCGCTGTCGAAGATAAAT TACAAGAAGGTGTTATTGAAACAATTACAAGTCTCTCACTAGCCAATATTAAGATCTGGATTCTAACAGG AGACAAACAAGAAACTGCCATCAATATCGGTTATGCCTGCAATGTGCTGACAGACGCCATGGATGCTCTA TTTGTGATAACGGGGAACACGGCTGGGGAAGTGCGAGAAGAACTCAGGAAAGCAAAGGAAAATTTGCTTG GACAAAGCACGAGTTTTTCCAATGGACATGCAGTTTATGACAACAAGCAGCGGTTGGGGTTGGACGCGGG TGCAGGAGAGGCTGTGACAGGAGAATATGCCTTAGTCATAAATGGCCACAGTTTGGCCCATGCCCTTGAA AGTGATGTCGAGAACGATCTTTTGGAGCTCGCCTGTGTGTGTAAGACTGTGGTTTGCTGCAGAGTCACCC CACTCCAGAAAGCCCAAGTAGTAGAGTTGGTAAAAAAGCACAGAAATGCTGTGACTTTGGCCATTGGTGA TGGGGCCAACGATGTCAGCATGATTAAAAGTGCCCACATTGGCATTGGCATCAGTGGTCAGGAAGGACTG CAAGCAGTCTTAGCCAGTGACTATGCATTGGCTCAGTTTAGATATCTCCAACGACTGCTTCTTGTTCATG GAAGGTGGTCCTACTACAGGATGTGCAAGTTCTTATGCTATTTCTTCTACAAGAACTTTGCGTTCACCCT TGTGCACTTCTGGTTTGCCTTCTTCTGTGGCTTCTCGGCACAGACTGTCTACGACCAGTGGTTCATCACT CTTTTTAACATTGTTTACACCTCACTACCCGTTTTAGCCATGGGAATGTTTGACCAGGACATAAATGAAC AGAACAGCATGGACTATCCTCAGCTCTACGAACCTGGACAACTGAATCTCCTTTTTAACAAGCGCAGATT TTTCATCTGTGTGGCACATGGAATCTACACCTCATTAGCCCTTTTCTTCATTCCCTACGGGGCCTTTTAC AATGTGGCTGCAGAGGACGGGCAACACATTGCTGACCTCCAGTCCTTTGCAGTTACCGTGGCCACATCAT TGGTCATTGTGGTCAGCATACAGATAGCCTTGGACACGAGTTACTGGACTGTGGTTAATCACGTCTTCAT CTGGGGCAGTGTTGCCACCTATTTCTCCATTTTACTGGCCATGCACAGTGATGGTGTCTTTGGAATCTTC CCACGCCATTTCCCCTTTGTTGGAAATGCACGGCACTCCCTGAGCCAGAAGTTTGTCTGGCTTGTGGTTC TCTTGACAGCAGTGACGTCAGTCATGCCAGTGGTGGTGGTCAGATTTCTGAAGATGTATTTATACCCAAG CCTGAGTGATCAGATCCGCCGGTGGCAGAAAGCTCAGCGAAAGAAAAGACCCCTGCGAAGCAGAAGGCCT CAGACCCGCAGGTCGAGCTCTAGAAGATCTGGATACGCGTTTGCTCACCAGGAGGGCTACGGAGAGCTCA TCACATCTGGAAAAAATATGCGAGCGAAAAGTCCAGCCCCAGCATCGGGGCTGGAAAAGAAGCTTTATAA TAACACGAGCTGGATTGAAAATTTATGTAAGAAAACCACAGACGCGGTGAGCGGCTTTAGTCATGATAAG ACAGTGAAATTGTGA
Translation (1194 aa): MMFCNKKKLLEVERVVKANDRDYNEKFQYADNRIHTSKYNVLTFLPINLFEQLQRVANAYFLFLLILQLI PEISSLTWFTTIVPLVLVISMTAVKDATDDYFRHKSDNQVNNRQSKVLINSKLQNEKWMNVKVGDIIKLE NNQFVAADLLLLSSSEPHGLCYVETAELDGETNLKVRQALPVTSELGADISSLAEFDGIVRCEAPNNKLD RFSGVLSWKDSKHALSNQKIILRGCVLRNTSWCFGMVLFAGPDTKLMQNSGKTKFKRTSIDRLMNTLVLW IFGFLVCLGIILAVGSSILESEVGDQFRTPPFWREGEKSFLFSGFLTFWSYVIILNTLVPISLYVSVEVI RLGHSYFINWDRKMYYASKAMPAEARTTTLNEELGQIEYIFSDKTGTLTQNIMTFKKCSINGRVYAGEVL DDPIQKKEITKEKEATDFSSKSKSEKTLHFFDQSLMESIELGDPKVHEFLRLLALCHTVMSEENSAGQLV YQVQSPDEGALVTAARNFGFIFKSRTPETITIEELGTPVTYQLLAFLDFNNIRKRMSVIVRNPEGRIKLY SKGADTILFEKLHPSNEDLQSLTSDHLSEFAGEGLRTLAIAYRELDDKYFKMWQKMLEDANSATLERDER ISGLYEEIERDLMLLGATAVEDKLQEGVIETITSLSLANIKIWILTGDKQETAINIGYACNVLTDAMDAL FVITGNTAGEVREELRKAKENLLGQSTSFSNGHAVYDNKQRLGLDAGAGEAVTGEYALVINGHSLAHALE SDVENDLLELACVCKTVVCCRVTPLQKAQVVELVKKHRNAVTLAIGDGANDVSMIKSAHIGIGISGQEGL QAVLASDYALAQFRYLQRLLLVHGRWSYYRMCKFLCYFFYKNFAFTLVHFWFAFFCGFSAQTVYDQWFIT LFNIVYTSLPVLAMGMFDQDINEQNSMDYPQLYEPGQLNLLFNKRRFFICVAHGIYTSLALFFIPYGAFY NVAAEDGQHIADLQSFAVTVATSLVIVVSIQIALDTSYWTVVNHVFIWGSVATYFSILLAMHSDGVFGIF PRHFPFVGNARHSLSQKFVWLVVLLTAVTSVMPVVVVRFLKMYLYPSLSDQIRRWQKAQRKKRPLRSRRP QTRRSSSRRSGYAFAHQEGYGELITSGKNMRAKSPAPASGLEKKLYNNTSWIENLCKKTTDAVSGFSHDK TVKL
|