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Report for CCDS22239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22239.1 Public Mus musculus 8 Leprotl1 23 108 98 CCDS HistoryNCBI Gene:68192Re-query CCDS DB by CCDS ID:22239.1Re-query CCDS DB by GeneID:68192See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033910.8 ENSMUSP00000033910.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033910.8Link to Ensembl Protein Viewer:ENSMUSP00000033910.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033910Re-query CCDS DB by Protein ID:ENSMUSP00000033910
Original member Current member NCBI NM_026609.2 NP_080885.1 Accepted alive Link to Nucleotide Sequence:NM_026609.2Link to Protein Sequence:NP_080885.1Re-query CCDS DB by Nucleotide ID:NM_026609Re-query CCDS DB by Protein ID:NP_080885Link to BLAST:NP_080885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080885.1 131 Q9CQ74 131 100% 0 0

Chromosomal Locations for CCDS 22239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 34137722 34137838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34138854 34139040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34140761 34140836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34146685 34146700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGCGGGCATCAAAGCTTTAATTAGTTTGTCCTTTGGAGGAGCGATCGGGCTGATGTTCCTGATGCTTG
GATGTGCCCTTCCGATATACAACCAATACTGGCCCCTCTTCGTTCTCTTCTTTTACATCCTCTCGCCCAT
CCCGTACTGCATAGCCAGAAGATTAGTGGATGACACGGACGCCATGAGCAACGCGTGTAAGGAGCTTGCC
ATATTCCTCACCACAGGCATCGTCGTCTCGGCTTTTGGACTCCCTGTTGTGTTTGCCAGAGCACATCTGA
TCGAGTGGGGAGCTTGCGCACTTGTTCTCACGGGAAACACAGTCATCTTCGCGACTATTCTAGGCTTCTT
CCTGGTCTTTGGAAGCAACGACGACTTCAGCTGGCAGCAGTGGTGA

Translation (131 aa):
MAGIKALISLSFGGAIGLMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCIARRLVDDTDAMSNACKELA
IFLTTGIVVSAFGLPVVFARAHLIEWGACALVLTGNTVIFATILGFFLVFGSNDDFSWQQW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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