NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26731.1 Public Mus musculus 13 Ocln 23 108 98 CCDS HistoryNCBI Gene:18260Re-query CCDS DB by CCDS ID:26731.1Re-query CCDS DB by GeneID:18260See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022140.11 ENSMUSP00000022140.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022140.11Link to Ensembl Protein Viewer:ENSMUSP00000022140.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022140Re-query CCDS DB by Protein ID:ENSMUSP00000022140
Original member Current member EBI ENSMUST00000069756.10 ENSMUSP00000065284.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069756.10Link to Ensembl Protein Viewer:ENSMUSP00000065284.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069756Re-query CCDS DB by Protein ID:ENSMUSP00000065284
Original member Current member EBI ENSMUST00000160859.7 ENSMUSP00000124849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160859.7Link to Ensembl Protein Viewer:ENSMUSP00000124849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160859Re-query CCDS DB by Protein ID:ENSMUSP00000124849
Original member Current member NCBI NM_001360536.1 NP_001347465.1 Accepted alive Link to Nucleotide Sequence:NM_001360536.1Link to Protein Sequence:NP_001347465.1Re-query CCDS DB by Nucleotide ID:NM_001360536Re-query CCDS DB by Protein ID:NP_001347465Link to BLAST:NP_001347465.1
Original member Current member NCBI NM_001360537.1 NP_001347466.1 Accepted alive Link to Nucleotide Sequence:NM_001360537.1Link to Protein Sequence:NP_001347466.1Re-query CCDS DB by Nucleotide ID:NM_001360537Re-query CCDS DB by Protein ID:NP_001347466Link to BLAST:NP_001347466.1
Original member Current member NCBI NM_001360538.1 NP_001347467.1 Accepted alive Link to Nucleotide Sequence:NM_001360538.1Link to Protein Sequence:NP_001347467.1Re-query CCDS DB by Nucleotide ID:NM_001360538Re-query CCDS DB by Protein ID:NP_001347467Link to BLAST:NP_001347467.1
Original member Current member NCBI NM_008756.2 NP_032782.1 Accepted alive Link to Nucleotide Sequence:NM_008756.2Link to Protein Sequence:NP_032782.1Re-query CCDS DB by Nucleotide ID:NM_008756Re-query CCDS DB by Protein ID:NP_032782Link to BLAST:NP_032782.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347465.1 521 Q61146 521 100% 0 0
NP_001347466.1 521 Q61146 521 100% 0 0
NP_001347467.1 521 Q61146 521 100% 0 0
NP_032782.1 521 Q61146 521 100% 0 0

Chromosomal Locations for CCDS 26731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100498814 100498915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100502936 100502977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100506151 100506322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100511412 100511627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100515027 100515175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100534963 100535124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100539261 100539933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100541068 100541117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGTCCGTGAGGCCTTTTGAAAGTCCACCTCCTTACAGACCTGATGAATTCAAACCCAATCATTATGCAC
CAAGCAATGACATGTATGGCGGAGAGATGCATGTCCGGCCGATGCTCTCTCAGCCAGCGTACTCTTTTTA
TCCGGAAGATGAAATTCTTCACTTCTACAAATGGACGTCGCCCCCAGGGGTGATCCGGATCCTGTCTATG
CTCATTATTGTGATGTGCATCGCCATATTTGCCTGTGTGGCTTCCACACTTGCTTGGGACAGAGGCTATG
GGACAGGGCTCTTTGGAGGAAGCCTAAACTACCCTTATAGTGGCTTTGGCTACGGAGGTGGCTATGGAGG
CGGCTATGGAGGCTATGGCTATGGCTATGGCGGATATACAGACCCAAGAGCAGCCAAAGGCTTCCTGTTG
GCCATGGCAGCCTTCTGCTTCATCGCTTCCTTAGTAATATTTGTGACCAGTGTTATAAGATCTGGAATGT
CCAGGACAAGAAGATATTACTTGATCGTGATCATAGTCAGCGCTATCCTGGGCATCATGGTGTTTATTGC
CACGATCGTGTACATAATGGGAGTGAACCCGACGGCCCAGGCTTCTGGATCTATGTACGGCTCACAGATA
TATATGATCTGCAACCAGTTTTATACTCCTGGAGGTACTGGTCTCTACGTGGATCAATATTTGTATCACT
ACTGTGTGGTTGATCCCCAGGAGGCTATAGCCATTGTCCTGGGGTTCATGATTATCGTGGCTTTTGCTTT
AATCATCTTTTTTGCTGTGAAAACCCGAAGAAAGATGGATCGGTATGATAAGTCCAATATTTTGTGGGAT
AAGGAACACATTTATGATGAACAGCCCCCCAATGTTGAAGAGTGGGTTAAAAATGTGTCTGCAGGCACAC
AGGACATGCCTCCACCCCCATCTGACTATGCGGAAAGAGTTGACAGTCCAATGGCCTACTCCTCCAATGG
CAAAGTGAATGGCAAGCGATCATACCCAGAGTCTTTCTATAAGTCAACACCTCTGGTGCCTGAAGTGGCC
CAGGAGATTCCTCTGACCTTGAGTGTGGATGACTTCAGGCAGCCTCGGTACAGCAGCAATGGTAACCTAG
AGACACCTTCTAAAAGGGCTCCCACGAAGGGGAAAGCAGGAAAGGGCAAGAGGACGGACCCTGACCACTA
TGAAACAGACTACACGACAGGTGGGGAGTCCTGCGAGGAGCTGGAGGAGGACTGGGTCAGGGAATATCCA
CCTATCACTTCAGATCAACAAAGACAACTCTACAAGAGAAATTTTGATGCAGGTCTGCAGGAGTATAAGA
GCTTACAGGCAGAACTAGACGACGTCAATAAAGAGCTCTCTCGTCTAGATAAAGAGCTGGATGACTACAG
AGAGGAGAGTGAAGAGTACATGGCTGCTGCTGATGAATATAATAGACTAAAGCAAGTTAAGGGATCTGCA
GATTATAAAAGTAAGAGGAATTACTGCAAGCAGTTGAAGAGCAAATTATCGCACATCAAGAGGATGGTGG
GAGATTATGACAGACGGAAACCTTAG

Translation (521 aa):
MSVRPFESPPPYRPDEFKPNHYAPSNDMYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSM
LIIVMCIAIFACVASTLAWDRGYGTGLFGGSLNYPYSGFGYGGGYGGGYGGYGYGYGGYTDPRAAKGFLL
AMAAFCFIASLVIFVTSVIRSGMSRTRRYYLIVIIVSAILGIMVFIATIVYIMGVNPTAQASGSMYGSQI
YMICNQFYTPGGTGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWD
KEHIYDEQPPNVEEWVKNVSAGTQDMPPPPSDYAERVDSPMAYSSNGKVNGKRSYPESFYKSTPLVPEVA
QEIPLTLSVDDFRQPRYSSNGNLETPSKRAPTKGKAGKGKRTDPDHYETDYTTGGESCEELEEDWVREYP
PITSDQQRQLYKRNFDAGLQEYKSLQAELDDVNKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSA
DYKSKRNYCKQLKSKLSHIKRMVGDYDRRKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH