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Report for CCDS17781.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17781.1 |
Public |
Mus musculus |
3 |
S1pr1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:13609](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:17781.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 17781.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000055676.3 |
ENSMUSP00000050897.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000055676.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000050897.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000055676](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000050897](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_007901.5 |
NP_031927.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_007901.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_031927.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_007901](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_031927](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_031927.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_031927.2 |
382 |
O08530 |
382 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 17781.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1149 nt): ATGGTGTCCACTAGCATCCCGGAGGTTAAAGCTCTCCGCAGCTCAGTCTCTGACTATGGGAACTATGATA TCATAGTCCGGCATTACAACTACACAGGCAAGTTGAACATCGGGGCGGAGAAGGACCATGGCATTAAACT GACTTCAGTGGTGTTCATTCTCATCTGCTGCTTCATCATCCTAGAGAATATATTTGTCTTGCTAACTATT TGGAAAACCAAGAAGTTCCACCGGCCCATGTACTATTTCATAGGCAACCTAGCCCTCTCGGACCTATTAG CAGGCGTGGCTTACACAGCTAACCTGCTGTTGTCTGGGGCCACCACTTACAAGCTCACACCTGCCCAGTG GTTTCTGCGGGAAGGGAGTATGTTTGTGGCTCTCTCTGCATCAGTCTTCAGCCTCCTTGCCATCGCCATT GAGCGCTACATCACCATGCTGAAGATGAAACTACACAACGGGAGCAACAGCTCGCGCTCCTTTCTGCTGA TCAGCGCCTGCTGGGTCATCTCCCTCATCCTGGGGGGCCTGCCCATCATGGGCTGGAACTGCATCAGCTC GCTGTCTAGCTGCTCCACCGTGCTCCCGCTCTACCACAAGCACTATATTCTCTTCTGCACCACCGTCTTC ACTCTGCTCCTGCTTTCCATCGTCATCCTCTACTGCAGGATCTACTCCTTGGTCAGGACTCGAAGCCGCC GCCTGACCTTCCGCAAGAACATCTCCAAGGCCAGTCGCAGTTCTGAGAAGTCTCTGGCCTTGCTGAAGAC GGTGATCATTGTCCTGAGTGTCTTCATTGCCTGCTGGGCCCCTCTCTTCATCCTACTACTGTTAGATGTG GGCTGCAAGGCGAAGACCTGTGACATCCTGTACAAAGCAGAGTACTTCCTGGTTCTGGCTGTGCTGAACT CAGGTACCAACCCCATCATCTACACTCTGACCAACAAGGAGATGCGCCGGGCCTTCATCCGGATCGTATC TTGTTGCAAATGCCCCAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCATCATCCCAGGCATGGAATTT AGCCGCAGCAAATCAGACAACTCCTCTCACCCCCAGAAGGACGATGGGGACAACCCAGAGACCATTATGT CGTCTGGAAACGTCAATTCTTCTTCCTAA
Translation (382 aa): MVSTSIPEVKALRSSVSDYGNYDIIVRHYNYTGKLNIGAEKDHGIKLTSVVFILICCFIILENIFVLLTI WKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAI ERYITMLKMKLHNGSNSSRSFLLISACWVISLILGGLPIMGWNCISSLSSCSTVLPLYHKHYILFCTTVF TLLLLSIVILYCRIYSLVRTRSRRLTFRKNISKASRSSEKSLALLKTVIIVLSVFIACWAPLFILLLLDV GCKAKTCDILYKAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIVSCCKCPNGDSAGKFKRPIIPGMEF SRSKSDNSSHPQKDDGDNPETIMSSGNVNSSS
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