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Report for CCDS37791.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37791.1 |
Public |
Mus musculus |
18 |
Nr3c1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:14815](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37791.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:14815](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37791.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000025300.12 |
ENSMUSP00000025300.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000025300.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000025300.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000025300](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000025300](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000115567.7 |
ENSMUSP00000111229.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000115567.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000111229.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000115567](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000111229](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000115571.7 |
ENSMUSP00000111233.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000115571.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000111233.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000115571](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000111233](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001361209.1 |
NP_001348138.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001361209.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001348138.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001361209](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001348138](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001348138.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001361210.1 |
NP_001348139.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001361210.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001348139.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001361210](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001348139](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001348139.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001361211.1 |
NP_001348140.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001361211.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001348140.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001361211](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001348140](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001348140.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001361212.1 |
NP_001348141.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001361212.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001348141.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001361212](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001348141](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001348141.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008173.4 |
NP_032199.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008173.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032199.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008173](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032199](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032199.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 37791.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2379 nt): ATGGACTCCAAAGAATCCTTAGCTCCCCCTGGTAGAGACGAAGTCCCCAGCAGTTTGCTTGGCCGGGGGA GGGGAAGCGTGATGGACTTGTATAAAACCCTGAGGGGTGGAGCTACAGTCAAGGTTTCTGCGTCTTCACC CTCAGTGGCTGCTGCTTCTCAGGCAGATTCCAAGCAGCAGAGGATTCTCCTTGATTTTTCAAAAGGCTCA GCAAGCAATGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGC CAGATTTATCCAAAGCCGTTTCACTGTCCATGGGACTGTATATGGGAGAGACCGAAACAAAAGTGATGGG GAATGACTTGGGCTACCCACAGCAGGGCCAGCTTGGCCTCTCCTCTGGGGAAACAGACTTTCGGCTTCTG GAAGAAAGCATTGCAAACCTCAATAGGTCGACCAGCCGTCCAGAGAACCCCAAGAGTTCAACACCTGCAG CTGGGTGTGCTACCCCGACAGAGAAGGAGTTTCCCCAGACTCACTCTGATCCATCTTCAGAACAGCAAAA TAGAAAAAGCCAGCCTGGCACCAACGGTGGCAGTGTGAAATTGTATACCACAGACCAAAGCACCTTTGAC ATCTTGCAGGATTTGGAGTTTTCTGCCGGGTCCCCAGGTAAAGAGACAAACGAGAGTCCTTGGAGGTCAG ACCTGTTGATAGATGAAAACTTGCTTTCTCCTTTGGCGGGAGAAGATGATCCATTCCTTCTGGAAGGGGA CGTGAATGAGGATTGCAAGCCTCTTATTTTACCGGACACTAAACCTAAAATTCAGGATACTGGAGATACA ATCTTATCAAGCCCCAGCAGTGTGGCACTGCCCCAAGTGAAAACAGAGAAAGATGATTTCATTGAGCTTT GCACCCCTGGGGTAATTAAGCAAGAGAAACTGGGCCCGGTTTATTGCCAGGCAAGCTTTTCTGGGACAAA TATAATTGGGAATAAAATGTCTGCCATTTCTGTTCATGGCGTGAGTACCTCTGGAGGACAGATGTACCAC TATGACATGAATACAGCATCCCTTTCTCAGCAGCAGGATCAGAAGCCTGTTTTTAATGTCATTCCACCAA TTCCTGTTGGTTCTGAAAACTGGAATAGGTGCCAAGGGTCTGGAGAGGACAACCTGACTTCCTTGGGGGC TATGAACTTCGCAGGCCGCTCAGTGTTTTCTAATGGATATTCAAGCCCTGGAATGAGACCAGATGTGAGT TCTCCTCCGTCCAGCTCCTCCACAGCAACGGGACCACCTCCCAAACTCTGCCTGGTGTGCTCCGATGAAG CTTCGGGATGCCATTATGGGGTGCTGACGTGTGGAAGCTGTAAAGTCTTCTTTAAAAGAGCAGTGGAAGG ACAGCACAATTACCTTTGTGCTGGAAGAAATGATTGCATCATTGATAAAATTCGAAGAAAAAACTGTCCA GCATGCCGCTATCGAAAATGTCTTCAAGCTGGAATGAACCTGGAAGCTCGAAAAACGAAGAAAAAAATTA AAGGAATTCAGCAAGCCACTGCAGGAGTCTCACAAGACACTTCTGAAAACGCTAACAAAACAATAGTTCC TGCCGCGCTGCCACAGCTTACCCCTACCCTGGTGTCACTGCTGGAGGTGATCGAGCCTGAGGTGTTATAT GCAGGATATGACAGCTCTGTTCCAGACTCAGCATGGAGAATTATGACCACGCTCAACATGTTAGGTGGGC GCCAAGTGATTGCCGCAGTGAAATGGGCAAAGGCGATACCAGGATTCAGAAACTTACACCTGGATGACCA AATGACCCTTCTACAGTACTCATGGATGTTTCTCATGGCATTTGCCCTGGGTTGGAGATCATACAGACAA GCAAGTGGAAACCTGCTATGCTTTGCTCCTGATCTGATTATTAATGAGCAGAGAATGACTCTACCCTGCA TGTATGACCAATGTAAACACATGCTGTTTATCTCCACTGAATTACAAAGATTGCAGGTATCCTATGAAGA GTATCTCTGTATGAAAACCTTACTGCTTCTCTCCTCAGTTCCTAAGGAAGGTCTGAAGAGCCAAGAGTTA TTTGATGAGATTCGAATGACTTATATCAAAGAGCTAGGAAAAGCCATTGTCAAAAGGGAAGGAAACTCCA GTCAGAATTGGCAGCGGTTTTATCAACTGACAAAACTTTTGGACTCCATGCATGATGTGGTTGAAAATCT CCTTAGCTACTGCTTCCAAACATTTTTGGATAAGTCCATGAGTATTGAATTCCCAGAGATGTTAGCTGAA ATCATCACTAATCAGATACCAAAATACTCAAATGGAAATATCAAAAAGCTTCTGTTTCATCAGAAATGA
Translation (792 aa): MDSKESLAPPGRDEVPSSLLGRGRGSVMDLYKTLRGGATVKVSASSPSVAAASQADSKQQRILLDFSKGS ASNAQQQQQQQQQQQQQQQQQPQPDLSKAVSLSMGLYMGETETKVMGNDLGYPQQGQLGLSSGETDFRLL EESIANLNRSTSRPENPKSSTPAAGCATPTEKEFPQTHSDPSSEQQNRKSQPGTNGGSVKLYTTDQSTFD ILQDLEFSAGSPGKETNESPWRSDLLIDENLLSPLAGEDDPFLLEGDVNEDCKPLILPDTKPKIQDTGDT ILSSPSSVALPQVKTEKDDFIELCTPGVIKQEKLGPVYCQASFSGTNIIGNKMSAISVHGVSTSGGQMYH YDMNTASLSQQQDQKPVFNVIPPIPVGSENWNRCQGSGEDNLTSLGAMNFAGRSVFSNGYSSPGMRPDVS SPPSSSSTATGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCP ACRYRKCLQAGMNLEARKTKKKIKGIQQATAGVSQDTSENANKTIVPAALPQLTPTLVSLLEVIEPEVLY AGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQ ASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQEL FDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAE IITNQIPKYSNGNIKKLLFHQK
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