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Report for CCDS28060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28060.1 Public Mus musculus 16 Ephb3 23 108 98 CCDS HistoryNCBI Gene:13845Re-query CCDS DB by CCDS ID:28060.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006112.6 ENSMUSP00000006112.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006112.6Link to Ensembl Protein Viewer:ENSMUSP00000006112.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006112Re-query CCDS DB by Protein ID:ENSMUSP00000006112
Original member NCBI NM_010143.1 NP_034273.1 Updated not alive Link to Nucleotide Sequence:NM_010143.1Link to Protein Sequence:NP_034273.1Re-query CCDS DB by Nucleotide ID:NM_010143Re-query CCDS DB by Protein ID:NP_034273
Current member NCBI NM_010143.2 NP_034273.1 Accepted alive Link to Nucleotide Sequence:NM_010143.2Link to Protein Sequence:NP_034273.1Re-query CCDS DB by Nucleotide ID:NM_010143Re-query CCDS DB by Protein ID:NP_034273Link to BLAST:NP_034273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034273.1 993 P54754 993 100% 0 0

Chromosomal Locations for CCDS 28060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21205170 21205263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21212890 21212954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21214325 21214997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21217196 21217351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21218015 21218365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21218495 21218619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21218794 21218953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21219039 21219147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21219455 21219507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21220420 21220542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21220647 21220894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21221285 21221500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21221627 21221776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21221865 21222058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21222149 21222304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21222408 21222516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGGCCGGAGCCCGCCCGCCGCCGGGGCTTCTGCCGCTGCTCGCTCCGCTGCTGCTGCCGCTGCTGCTTC
CCGCCGGCTGCTGGGCGCTGGAAGAGACTCTCATGGACACGAAATGGGTGACGTCTGAGCTGGCATGGAC
ATCTCATCCAGAGAGTGGGTGGGAAGAAGTAAGCGGCTATGATGAAGCCATGAATCCTATCCGCACGTAT
CAGGTGTGTAATGTGCGTGAGTCGAGCCAGAACAACTGGCTGCGGACGGGTTTCATCTGGCGGCGGGAAG
TCCAGCGCGTCTACGTGGAGCTGAAGTTCACCGTAAGAGACTGTAACAGCATTCCCAACATCCCTGGCTC
CTGCAAGGAAACCTTCAACCTTTTCTACTACGAGGCTGATAGCGATGTGGCCTCAGCCTCCTCTCCCTTC
TGGATGGAGAACCCCTACGTGAAAGTGGACACCATTGCGCCAGATGAGAGCTTCTCGCGGCTCGATGCCG
GGCGTGTCAACACCAAGGTGCGCAGCTTCGGGCCGCTTTCCAAGGCTGGCTTCTACTTGGCCTTCCAGGA
CCAAGGTGCCTGCATGTCACTCATCTCTGTGCGTGCCTTCTACAAGAAGTGTGCATCCACCACTGCAGGC
TTCGCACTCTTCCCCGAGACCCTCACGGGGGCTGAGCCCACTTCGCTGGTCATTGCCCCCGGCACCTGCA
TCGCTAACGCTGTGGAGGTCTCTGTACCACTCAAGCTCTACTGCAATGGCGACGGGGAGTGGATGGTGCC
CGTCGGTGCCTGCACCTGCGCTACTGGCCATGAGCCAGCCGCCAAGGAGTCCCAGTGCCGTGCCTGTCCT
CCTGGGAGTTACAAAGCAAAGCAAGGAGAAGGGCCCTGCCTCCCCTGTCCCCCCAATAGCCGCACCACCT
CGCCGGCTGCCAGCATCTGCACCTGCCATAATAACTTCTACCGTGCAGACTCAGACTCGGCCGACAGCGC
CTGCACCACGGTGCCATCTCCACCCCGGGGTGTGATCTCCAATGTGAATGAGACCTCGCTAATCCTCGAA
TGGAGTGAGCCCCGGGACCTTGGCGGACGAGATGACCTCCTTTATAATGTTATCTGCAAGAAGTGCCGTG
GGAGCTCTGGGGCTGGGGGTCCGGCAACCTGTTCACGCTGCGATGACAACGTAGAGTTTGTACCTCGGCA
GCTGGGCCTGACAGAGCGCCGGGTCCACATTAGCCACCTGTTGGCCCACACACGCTACACCTTTGAGGTG
CAGGCTGTCAACGGTGTCTCAGGCAAAAGCCCTTTGCCACCCCGCTATGCAGCTGTGAATATCACCACCA
ACCAGGCTGCTCCATCAGAAGTGCCTACACTCCACCTGCACAGCAGCTCGGGGAGCAGCCTGACCCTGTC
CTGGGCACCCCCAGAGCGGCCTAATGGAGTCATCTTGGACTATGAGATGAAGTACTTTGAGAAGAGTAAA
GGCATCGCCTCCACTGTAACCAGCCAGAAGAACTCCGTACAACTGGACGGGCTGCAGCCTGATGCCCGCT
ACGTAGTTCAGGTCCGGGCTCGCACAGTAGCGGGTTACGGACAGTATAGCCACCCGGCTGAGTTTGAGAC
CACAAGTGAAAGAGGTTCAGGTGCCCAGCAGCTTCAAGAACAGCTTCCCCTGATTGTGGGATCCACCGTA
GCCGGGTTTGTCTTCATGGTGGTCGTCGTGGTCATCGCTCTTGTCTGCCTCAGGAAGCAGCGCCATGGCC
CCGATGCAGAATACACAGAGAAGCTGCAGCAATACATTGCTCCTGGGATGAAAGTTTACATTGACCCCTT
TACCTATGAGGATCCCAATGAGGCCGTCCGAGAGTTCGCCAAGGAGATCGATGTGTCCTGTGTCAAGATC
GAGGAGGTGATTGGAGCTGGGGAGTTTGGGGAAGTGTGCCGGGGTCGACTGAAACTGCCCGGCCGCCGGG
AGGTGTTCGTGGCTATCAAGACGCTGAAGGTGGGATACACGGAGAGGCAGCGGCGGGACTTCCTAAGTGA
GGCTTCCATTATGGGTCAGTTTGACCATCCCAATATAATCCGTCTAGAGGGTGTGGTCACCAAAAGTCGT
CCAGTCATGATCCTCACTGAGTTCATGGAGAACTGTGCCCTGGACTCCTTTCTACGGCTCAATGACGGAC
AGTTCACGGTCATCCAGCTTGTGGGCATGTTACGAGGCATTGCTGCTGGCATGAAGTACTTGTCTGAGAT
GAACTACGTGCACCGTGACCTTGCTGCCCGAAACATCCTTGTCAACAGCAACTTGGTCTGCAAAGTCTCT
GACTTTGGCCTCTCCCGCTTCCTGGAGGATGACCCATCAGACCCCACCTACACCAGCTCCCTGGGTGGGA
AGATCCCTATCCGCTGGACCGCCCCGGAGGCCATAGCCTATCGGAAGTTTACGTCTGCCAGCGATGTCTG
GAGCTATGGGATTGTCATGTGGGAGGTCATGAGCTACGGAGAGCGACCCTACTGGGATATGAGCAACCAG
GATGTCATTAATGCTGTAGAGCAAGACTATCGGTTACCACCCCCCATGGACTGCCCCACCGCGCTGCACC
AGCTCATGCTGGACTGTTGGGTGCGGGACCGGAACCTCAGGCCCAAGTTCTCTCAAATCGTCAACACACT
AGACAAACTTATCCGCAATGCTGCCAGCCTCAAGGTCACCGCCAGTGCCCCATCTGGCATGTCCCAGCCC
CTCCTGGACCGCACAGTCCCAGATTATACGACCTTCACGACAGTGGGTGACTGGCTAGATGCCATCAAGA
TGGGGAGGTATAAAGAGAGCTTTGTCGGTGCTGGGTTTGCATCCTTTGACCTGGTGGCCCAGATGACTGC
AGAAGATCTGCTAAGGATTGGGGTCACTTTGGCTGGGCACCAGAAGAAGATCCTCTGCAGTATCCAGGAC
ATGCGGCTGCAGATGAACCAGACCCTGCCTGTGCAGGTCTGA

Translation (993 aa):
MAGARPPPGLLPLLAPLLLPLLLPAGCWALEETLMDTKWVTSELAWTSHPESGWEEVSGYDEAMNPIRTY
QVCNVRESSQNNWLRTGFIWRREVQRVYVELKFTVRDCNSIPNIPGSCKETFNLFYYEADSDVASASSPF
WMENPYVKVDTIAPDESFSRLDAGRVNTKVRSFGPLSKAGFYLAFQDQGACMSLISVRAFYKKCASTTAG
FALFPETLTGAEPTSLVIAPGTCIANAVEVSVPLKLYCNGDGEWMVPVGACTCATGHEPAAKESQCRACP
PGSYKAKQGEGPCLPCPPNSRTTSPAASICTCHNNFYRADSDSADSACTTVPSPPRGVISNVNETSLILE
WSEPRDLGGRDDLLYNVICKKCRGSSGAGGPATCSRCDDNVEFVPRQLGLTERRVHISHLLAHTRYTFEV
QAVNGVSGKSPLPPRYAAVNITTNQAAPSEVPTLHLHSSSGSSLTLSWAPPERPNGVILDYEMKYFEKSK
GIASTVTSQKNSVQLDGLQPDARYVVQVRARTVAGYGQYSHPAEFETTSERGSGAQQLQEQLPLIVGSTV
AGFVFMVVVVVIALVCLRKQRHGPDAEYTEKLQQYIAPGMKVYIDPFTYEDPNEAVREFAKEIDVSCVKI
EEVIGAGEFGEVCRGRLKLPGRREVFVAIKTLKVGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTKSR
PVMILTEFMENCALDSFLRLNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVS
DFGLSRFLEDDPSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ
DVINAVEQDYRLPPPMDCPTALHQLMLDCWVRDRNLRPKFSQIVNTLDKLIRNAASLKVTASAPSGMSQP
LLDRTVPDYTTFTTVGDWLDAIKMGRYKESFVGAGFASFDLVAQMTAEDLLRIGVTLAGHQKKILCSIQD
MRLQMNQTLPVQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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