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Report for CCDS20051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20051.1 Public Mus musculus 6 Ephb6 23 108 98 CCDS HistoryNCBI Gene:13848Re-query CCDS DB by CCDS ID:20051.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114732.2 ENSMUSP00000110380.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114732.2Link to Ensembl Protein Viewer:ENSMUSP00000110380.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114732Re-query CCDS DB by Protein ID:ENSMUSP00000110380
Original member NCBI NM_001146351.1 NP_001139823.1 Updated not alive Link to Nucleotide Sequence:NM_001146351.1Link to Protein Sequence:NP_001139823.1Re-query CCDS DB by Nucleotide ID:NM_001146351Re-query CCDS DB by Protein ID:NP_001139823
Current member NCBI NM_001146351.2 NP_001139823.1 Accepted alive Link to Nucleotide Sequence:NM_001146351.2Link to Protein Sequence:NP_001139823.1Re-query CCDS DB by Nucleotide ID:NM_001146351Re-query CCDS DB by Protein ID:NP_001139823Link to BLAST:NP_001139823.1
Original member NCBI NM_007680.4 NP_031706.3 Updated not alive Link to Nucleotide Sequence:NM_007680.4Link to Protein Sequence:NP_031706.3Re-query CCDS DB by Nucleotide ID:NM_007680Re-query CCDS DB by Protein ID:NP_031706
Current member NCBI NM_007680.5 NP_031706.3 Accepted alive Link to Nucleotide Sequence:NM_007680.5Link to Protein Sequence:NP_031706.3Re-query CCDS DB by Nucleotide ID:NM_007680Re-query CCDS DB by Protein ID:NP_031706Link to BLAST:NP_031706.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139823.1 1014 O08644-1 1014 100% 0 0
NP_031706.3 1014 O08644-1 1014 100% 0 0

Chromosomal Locations for CCDS 20051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41613316 41613418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41613752 41613816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41614079 41614841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41615489 41615644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41615917 41616267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41616460 41616584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41616748 41616910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41617264 41617378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41617627 41617679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41617847 41617966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41618068 41618315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41618571 41618744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41619231 41619380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41619607 41619800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41619923 41620078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41620196 41620304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3045 nt):
ATGGCTACTGAGGGCACGACTGGCTCAGGGAGCAGAGTGGTGGCGGGCATGGTGTGCAGTCTGTGGCTCC
TGGTTCTAGGGTCATCAGTTCTAGCTCTGGAAGAGGTGCTGCTGGATACCACAGGAGAGACCTCTGAGAT
TGGCTGGCTCACCTACCCGCCAGGTGGGTGGGATGAGGTGAGTGTTCTAGATGACCAGCGCCGTCTGACT
CGGACCTTCGAAGCATGCCACGTTGCAGGGCTCCCTCCTGGTTCTGGCCAGGACAATTGGCTGCAGACAC
ACTTTGTGGAACGGCGAGGGGCCCAGAGGGCACACATCCGCCTTCACTTCTCTGTACGAGCCTGTTCCAG
CCTGGGTGTGAGTGGGGGTACCTGCCGAGAGACCTTCACCCTTTACTACCGGCAGGCTGATGAGCCAGAC
GGCCCCGACAGTATTGCGGCCTGGCACCTCAAACGCTGGACCAAAGTGGACACAATTGCCGCAGATGAGA
GCTTCCCTGCCTCCTCTTCCTCTTCCTCATGGGCTGTGGGACCCCACAGGACCGGTCAGCGGGTGGGACT
GCAGCTGAATGTCAAAGAGCGCAGCTTTGGTCCTCTCACTCAGCGTGGCTTCTATGTGGCCTTCCAGGAC
ACAGGGGCCTGCCTGGCCCTTGTGGCAGTCAAGCTCTTCTCCTACACCTGTCCCTCCGTCCTGCGTGCCT
TTGCCTCTTTTCCTGAGACACAGGCCAGTGGAGCTGGAGGGGCTTCCTTAGTGGCAGCTGTGGGCACCTG
TGTAGCTCATGCAGAACCAGAGGAGGATGGAGTAGGAGGCCAGGCAGGGGGCAGCCCCCCAAGGTTACAC
TGTAATGGCGAAGGCAGGTGGATGGTAGCTGTGGGAGGCTGCCGCTGCCAGCCTGGACACCAGCCTGCTC
GTGGAGACAAGCTCTGCCAAGCCTGCCCTGAGGGATCCTATAAGGCCCTGGCTGGGAATGTTCCCTGTTC
ACCGTGTCCAGCCCGCAGCCACTCCCCTGACCCTGCAGCCCCAGTTTGCCCATGTCTCCAAGGCTTCTAC
AGGGCCAGTTCGGACCCACCAGAGGCTCCCTGCACTGGTCCTCCATCGGCTCCCCGGGAGCTATGGTTTG
AGGTGCAAGGCTCGGCACTCATGCTGCACTGGCGTCTGCCTCAGGAGCTGGGTGGACGAGGGGATCTGCT
CTTCAATGTTGTGTGCAAGGAGTGTGGAGGTCACGGAGAGCCCAGCAGTGGGGGGATGTGTCGCCGCTGC
AGGGACGAGGTGCATTTCGACCCCCGCCAGAGGGGACTGACTGAGAGTCGAGTGTTAGTTGGGGGGCTCC
GAGCACACGTGCCATACATCTTGGAAGTGCAGGCTGTCAATGGGGTGTCTGAGCTCAGCCCTGACCCTCC
CCAGGCAGCAGCCATCAATGTCAGCACCAGCCACGAAGTCCCTTCTGCAGTCCCTGTGATGCACCAGGTG
AGCCGGGCAGCCAACAGCATCACAGTATCCTGGCCACAGCCTGAGCAAACAAATGGGAACATCCTCGACT
ACCAGCTGCGCTACTATGACCAGGCAGAAGATGAATCCCACTCCTTCACCATGACCAGTGAGACCAACAC
TGCCACTGTGACACGGTTGAGCCCTGGCCACATCTATGGCTTCCAGGTGCGGGCACGGACTGCAGCTGGC
CACGGCCCCTATGGGGGCAAAGTCTATTTTCAGACATTGCCTCAAGGTGAGCTGTCCTCCCAGCTTCCAG
AGAAGCTGTCCTTGGTGATTGGTTCCATCCTGGGGGCCTTGGCCTTCCTTCTACTGGCAGCCATCACTGT
ACTGGCTGTCATCTTCCAGCGGAAGCGCCGTGGGACCGGCTACACAGAACAACTGCAACAATACAGCAGC
CCAGGACTTGGAGTGAAGTATTACATTGACCCTTCTACATACGATGACCCCTGCCAGGCCATCAGAGAGC
TTGCTCGAGAGGTTGACCCTACATATATCAAGATTGAAGAAGTCATTGGGGCAGGTTCCTTTGGAGAAGT
GCGTCGGGGCCGACTGCAACCCCGGGGAAGGAGGGAACAAGCTGTGGCTATCCAGGCCTTGTGGGCAGGG
GGTGCTGAGAGCCTGAAGATGACCTTTCTGGGTCGGGCAGCACTGCTGGGCCAGTTCCAGCACCCCAATA
TCCTGCGGCTGGAAGGTGTAGTCACTAAGAGTCGGCCTGTCATGGTGCTGACAGAACTCATGGAACTTGG
TCCCCTGGACAGCTTTCTTAGGCAGCGAGAGGGCCAGTTCAGTAGCCTGCAGCTGGTGGCCATGCAGCGG
GGTGTGGCTGCTGCCATGCAGTACTTGTCCAGCTTTGCCTTTGTTCACCGAGCACTCTCGGCCCGAAGTG
TGCTAGTGAATAGCCACCTGGTGTGTAAGGTGGCACGTCTCGGCCACAGTCCTCAGGGTTCAAGTTCCTT
GCTTCGCTGGGCAGCCCCAGAGGTCATTACACATGGAAAGTATACAACATCTAGCGATGTCTGGAGCTTT
GGCATACTCATGTGGGAAGTGATGAGCTATGGAGAACGGCCCTACTGGGACATGAACGAGCAGGAGGTAC
TAAATGCAATAGAGCAAGAGTTCCGGCTGCCCCCACCTCCAGGGTGCCCCCCTGGACTACATCTACTGAT
GCTAGACACTTGGCAGAAGGACCGTGCCCGTCGGCCTCATTTTGACCAGCTGGTAGCTGCATTTGACAAG
ATGATTCGCAAGCCTGATACTCTCCAGGCTGAAGGGGGCTCCGGGGACAGGCCTTCCCAGGCTCTTCTGA
ACCCTGTGGCCTTGGACTTCCCTTGCCTGGACTCTCCCCAGGCCTGGCTTTCAGCCATTGGACTAGAGTG
CTACCAGGACAACTTCTCCAAGTTTGGTCTTTCCACCTTCAGTGATGTGGCTCAGCTCAGCCTGGAAGAC
CTGCCAGGCCTGGGCATCACCCTAGCTGGCCACCAGAAGAAACTTCTGCACAACATTCAGCTCCTCCAGC
AGCACCTGAGGCAGCCAGGCTCAGTGGAAGTGTAA

Translation (1014 aa):
MATEGTTGSGSRVVAGMVCSLWLLVLGSSVLALEEVLLDTTGETSEIGWLTYPPGGWDEVSVLDDQRRLT
RTFEACHVAGLPPGSGQDNWLQTHFVERRGAQRAHIRLHFSVRACSSLGVSGGTCRETFTLYYRQADEPD
GPDSIAAWHLKRWTKVDTIAADESFPASSSSSSWAVGPHRTGQRVGLQLNVKERSFGPLTQRGFYVAFQD
TGACLALVAVKLFSYTCPSVLRAFASFPETQASGAGGASLVAAVGTCVAHAEPEEDGVGGQAGGSPPRLH
CNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSYKALAGNVPCSPCPARSHSPDPAAPVCPCLQGFY
RASSDPPEAPCTGPPSAPRELWFEVQGSALMLHWRLPQELGGRGDLLFNVVCKECGGHGEPSSGGMCRRC
RDEVHFDPRQRGLTESRVLVGGLRAHVPYILEVQAVNGVSELSPDPPQAAAINVSTSHEVPSAVPVMHQV
SRAANSITVSWPQPEQTNGNILDYQLRYYDQAEDESHSFTMTSETNTATVTRLSPGHIYGFQVRARTAAG
HGPYGGKVYFQTLPQGELSSQLPEKLSLVIGSILGALAFLLLAAITVLAVIFQRKRRGTGYTEQLQQYSS
PGLGVKYYIDPSTYDDPCQAIRELAREVDPTYIKIEEVIGAGSFGEVRRGRLQPRGRREQAVAIQALWAG
GAESLKMTFLGRAALLGQFQHPNILRLEGVVTKSRPVMVLTELMELGPLDSFLRQREGQFSSLQLVAMQR
GVAAAMQYLSSFAFVHRALSARSVLVNSHLVCKVARLGHSPQGSSSLLRWAAPEVITHGKYTTSSDVWSF
GILMWEVMSYGERPYWDMNEQEVLNAIEQEFRLPPPPGCPPGLHLLMLDTWQKDRARRPHFDQLVAAFDK
MIRKPDTLQAEGGSGDRPSQALLNPVALDFPCLDSPQAWLSAIGLECYQDNFSKFGLSTFSDVAQLSLED
LPGLGITLAGHQKKLLHNIQLLQQHLRQPGSVEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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