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Report for CCDS40114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40114.1 Public Mus musculus 7 Otoa 23 108 98 CCDS HistoryNCBI Gene:246190Re-query CCDS DB by CCDS ID:40114.1Re-query CCDS DB by GeneID:246190See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047025.14 ENSMUSP00000044177.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047025.14Link to Ensembl Protein Viewer:ENSMUSP00000044177.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047025Re-query CCDS DB by Protein ID:ENSMUSP00000044177
Original member Current member NCBI NM_139310.2 NP_647471.1 Accepted alive Link to Nucleotide Sequence:NM_139310.2Link to Protein Sequence:NP_647471.1Re-query CCDS DB by Nucleotide ID:NM_139310Re-query CCDS DB by Protein ID:NP_647471Link to BLAST:NP_647471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647471.1 1137 Q8K561 1137 100% 0 0

Chromosomal Locations for CCDS 40114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 121091544 121091634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121092550 121092578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121092671 121092701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121092819 121092846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121094578 121094665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121099136 121099267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121102499 121102734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121105872 121105975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121110972 121111072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121114470 121114609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121118542 121118665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121121868 121122083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121125420 121125587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121127632 121127772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121130035 121130093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121131267 121131384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121132365 121132438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121132787 121132922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121133928 121134118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121139777 121139870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121143853 121143982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121145452 121145639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121147633 121147788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121155129 121155271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121155775 121155911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121156428 121156525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121160330 121160525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121162867 121162931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3414 nt):
ATGTCTCAGGGACCTAGGACGTGCTCCCTTCTCCTGGTCCTCCTTCTGAGCCATGGAGGTGCCTATCAGA
GAGAGCCAAGCCCCAGGCAGGATTTACATCCATTGTTGCAGAAAATGGCGGAAGAAATAATAGAGGGAAG
CTATCTGAATGCGTTACTGGATCTCACACTATTTGAAAGGTCCCATGTCTGGACTGCAGACCTGTCCCAC
AGAGTCCTTGCCTATCTGAACTCAAAGAATGTGGCCTTCACCATTCCCAGCCTGCAGGCAGTCATGGAAG
CACACCTGGAACAGTATCTGTACCAGCCACAGAAGCTGCTGGAGGACCTGAGGGCTACTGATAACCAGCA
GTTCCACACCGCCATGAAATGCCTTCTGGAAGACAAATGGGGCCACCTGGATCTGGAGGACGTCGTCATC
AACTTGGGAGACATTCGGGACGAGGCCCTTCAGAGCCCTGGTGTGAACCGCAGCCTCTTTCTCATCACGT
TGGAACGCTGTTTCCAGGTGCTGAATGCCTTGGAGTGTGTGGAGGTCCTGGGCAGGGTGCTCAGAGGGTC
CTCCGGCAGCTTCCTGCAGCCAGACATTACAGAAAGGCTACCCCAGGACCTGCACGAGGATGCCTTTAAG
AACCTGTCCGCAGTGTTCAAAGACCTCTATGACCAGACTTCAGCTCACACCCAGAGAGCTCTCTACTCAT
GGATGACAGGGATCCTGAGGACACCCTTCAACGTCACTGATGGCTCAGTTTCATGGGTCAGTGCAGAAAA
GTTATGGATTTTGGGCAGATACATGGTTCACCTATCGTTTGAAGAAATTATGAACATTAGCCCTATAGAA
ATTGGGTTGTTTATCAGCTATGACAACGCCACCAAGCAGTTGGACATGGTGTATGACATCACCCCTGAAC
TGGCCCAGGCATTTCTGGAGAGGATCCGCTGTTCCAGCTTTGACGTGAGGAACATCTCTACCATCCACAG
GTTGGGGCTGTTGGTTTGTTTCTATGATGGTTTGGAGCTGCTGGATGCCACCCTGGCCCAAGTCCTTCTC
CACCAGATGCTCAAGTGCAGCCGCCTCCGGGGCTTCCAGGCTGGCGTCCAGAAGCTCAAGGCCAACCTCT
TGGACATTGCTACAGAGAACCAGACCCTCAACGAGACCCTAGGCTCTCTGTCAGATGCAGTTGTAGGTCT
GACCAGCAGTCAGCTGGAATCCCTCTCCTCCGATGCAGTGCACAGCGCCATCTCTACCCTCAACCAGGTT
ACAGGCTGGGGCAGAAGCCAGATTGTCATCTTGTCTGCCAAATATTTGGCTCAGGAAAAGGTGCTGTCCT
TCTACAACGTCTGCCAGATGGGCGTGCTGCTGGCAGGGGTGGGTACGCAAGCCTTCTACAGCATGGACCA
CAAGGATCTCTGGCAGGTGCTGAGAAGCCCTCTTTCCCAGGATATGTCTGATTTGTCACCTGTCCAGCAG
CAAGGTGTCCTCGGCAAGCTGATGGAAGCAGAAGATGCTACTTCAGGCATCGCGGAGGTACCAAGAGCTC
TCTTTAAGGAGGTGTCTCTCTATGATTTATGGAAAGAATCTCGATTCAATGCTACAGTCCTGAAGGCAAA
GGAGCTTCGTAGGAGCCAGGCCCTGTTCCTGTATGAGTTTCTGGGAAAGACCACAGAAAGGCCAGAGGAG
CTCCTGAGTGCCGGGCAGCTGGTGAAGGGCGTGCCGTGCTCGCACATCGATGCCATGAGTGACCACCTCT
TCCTGGCCCTCTTCCAGTATTTTGACAACAACTTCTCCCTGCTTTCTCCAGATCAGGTCAATTGCTTGGC
GTGGAAATACTGGGAAGTTTCAAGGTCCTCCATGCCACCATTCCTCTTGGCCACCCTCCCCTCACGGTTC
CTGTCTTCAATTCCCCCCTCTCGCTGTGTGCGGTTTCTGATCAGCCTGGGTAAGAGGCGCTTGGAGACTT
TGGTTTTAGATTCTGACAAAAGGAGTGTGGTCGTCAGGAAGGTGCAGCAGTGCTTGGATGGTGTCATTGC
TGATGAATACACTGTGGACATTGTGGGACACCTCCTGTGCCACTTGCCAGCCTCCTTCATTGAGAGAGGG
ATCTCCCCCAGAGCCTGGGCCGCTGCTCTGCATGGTCTTAGAAGCTGTACAGCTCTCAGCTCTGAGCAGA
AGGCTGCGGTGAGGGTCAGGCTCCTGGAGCAGTGGGGACCTCCTGAGAACTGGACAGCAGAGACAACCAA
GGACTTGGCTCCTTTCTTAGCGTTTTTCTCAGGAGATGAACTGCACACTGTTGCCACAAAGTTTCCTGAA
ATCCTTCAGCAAACAGCTTCCAAGATGGTTGGGGTGTTGCTTCCTAAAGAATTTCTCTGGGCTGTCTTTG
AGTCTGTTCAGAATAGCAGTAACGAGAGCCCCAGCTTTGACCCCACCTTTGGTTGTCATGGAGTTGTGAC
TCCCTCTTCAGATGATATCTTCAAGTTGGCCGAAGCCAATGCCTGCTGGGACCCCGAGGTTCTTCTCTGC
ATGGAGGAGGACACTTTCATCAGGAACGTGGAGCTGCTGGGGGCTGTGAAGGGTTTCAGCCGGGCTCAGC
TGATGGCCCTGAAGGAGAAGGCAATTCAGGTTTGGGACTTGCCCTCCCGCTGGAAAGAACACCATATTGT
CTCCCTGGGGCGCATTGCTTTGGCTCTCAGCGAGAGTGAGTTGGAGCAGCTGGACCTTAGCTCCATAGAC
ACCGTGGCATCCCTGGGCCAGCAGACAGAATGGACACCAGGACAGGCTAAATCCATTCTGCAGGCATTTC
TTGAAGATTCAGGCTATGGGATACAGGATCTGAAGAGCTTCCATTTGGTTGGGTTTGGTCCTACTCTATG
TGCTATGGACCCCACTGAAATACAACTTATAAAGACCTCAGAATTCAGGGCAGTGGTAGCCAGAATTGGG
ACACTGTTCTGCAGTACCCCCGTCTTAGCTGGATTTAAGAAGAAAGCAGAAGTTGTATTTGGGAGACCCA
CTGAGTGGACCAGCTCCATCTTGCAGGAGCTTGGGACCATTGCAGCTGGGATAACGAAGGCAGAGCTCCG
AATGCTCAACAAAGAACTGATGACGTATTTCCAGCCGTCAGCCATAAGATGCCTGCCTGGTGAGGTATTC
AAAGAGCTGTCCACGGAGCAGATCGCTTCCCTGGGTCCTCAGAATGCAGCCTCTGTAACCCACTCCCAGC
GCCTGCAGCTCAGCTCGGCACAGCTGCAGAGCCTCCAGAGGGCACTAGATGGCGCCAAGACTCACTCCTG
GCAGACCGATCCTCTGAGTTCCAGCCCTACCTGGCCAGCCTCCACTGGGTCCCCAACAGGAGAGCCTGCC
TCCCAGGCGCTTTGGCTTGGCTGTACCCTGCTGCTTCTGACGGCCAAGTCCTGA

Translation (1137 aa):
MSQGPRTCSLLLVLLLSHGGAYQREPSPRQDLHPLLQKMAEEIIEGSYLNALLDLTLFERSHVWTADLSH
RVLAYLNSKNVAFTIPSLQAVMEAHLEQYLYQPQKLLEDLRATDNQQFHTAMKCLLEDKWGHLDLEDVVI
NLGDIRDEALQSPGVNRSLFLITLERCFQVLNALECVEVLGRVLRGSSGSFLQPDITERLPQDLHEDAFK
NLSAVFKDLYDQTSAHTQRALYSWMTGILRTPFNVTDGSVSWVSAEKLWILGRYMVHLSFEEIMNISPIE
IGLFISYDNATKQLDMVYDITPELAQAFLERIRCSSFDVRNISTIHRLGLLVCFYDGLELLDATLAQVLL
HQMLKCSRLRGFQAGVQKLKANLLDIATENQTLNETLGSLSDAVVGLTSSQLESLSSDAVHSAISTLNQV
TGWGRSQIVILSAKYLAQEKVLSFYNVCQMGVLLAGVGTQAFYSMDHKDLWQVLRSPLSQDMSDLSPVQQ
QGVLGKLMEAEDATSGIAEVPRALFKEVSLYDLWKESRFNATVLKAKELRRSQALFLYEFLGKTTERPEE
LLSAGQLVKGVPCSHIDAMSDHLFLALFQYFDNNFSLLSPDQVNCLAWKYWEVSRSSMPPFLLATLPSRF
LSSIPPSRCVRFLISLGKRRLETLVLDSDKRSVVVRKVQQCLDGVIADEYTVDIVGHLLCHLPASFIERG
ISPRAWAAALHGLRSCTALSSEQKAAVRVRLLEQWGPPENWTAETTKDLAPFLAFFSGDELHTVATKFPE
ILQQTASKMVGVLLPKEFLWAVFESVQNSSNESPSFDPTFGCHGVVTPSSDDIFKLAEANACWDPEVLLC
MEEDTFIRNVELLGAVKGFSRAQLMALKEKAIQVWDLPSRWKEHHIVSLGRIALALSESELEQLDLSSID
TVASLGQQTEWTPGQAKSILQAFLEDSGYGIQDLKSFHLVGFGPTLCAMDPTEIQLIKTSEFRAVVARIG
TLFCSTPVLAGFKKKAEVVFGRPTEWTSSILQELGTIAAGITKAELRMLNKELMTYFQPSAIRCLPGEVF
KELSTEQIASLGPQNAASVTHSQRLQLSSAQLQSLQRALDGAKTHSWQTDPLSSSPTWPASTGSPTGEPA
SQALWLGCTLLLLTAKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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