NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38495.1 Public Mus musculus 3 Kcnn3 23 108 98 CCDS HistoryNCBI Gene:140493Re-query CCDS DB by CCDS ID:38495.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000811.7 ENSMUSP00000000811.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000811.7Link to Ensembl Protein Viewer:ENSMUSP00000000811.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000811Re-query CCDS DB by Protein ID:ENSMUSP00000000811
Original member Current member NCBI NM_080466.2 NP_536714.2 Accepted alive Link to Nucleotide Sequence:NM_080466.2Link to Protein Sequence:NP_536714.2Re-query CCDS DB by Nucleotide ID:NM_080466Re-query CCDS DB by Protein ID:NP_536714Link to BLAST:NP_536714.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536714.2 732 P58391 732 100% 0 0

Chromosomal Locations for CCDS 38495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89520469 89521404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89564859 89564954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89609318 89609736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89645442 89645583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89652018 89652128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89661121 89661248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89662714 89662783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89667085 89667381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGACACTTCTGGGCACTTCCATGACTCGGGGGTGGGGGACCTGGATGAAGACCCCAAGTGTCCCTGTC
CATCTTCTGGGGACGAGCAACAGCAGCAGCAGCAACCGCCACCACCGCCAGCGCCACCAGCAGTCCCCCA
GCAGCCTCCGGGACCCTTGCTGCAGCCTCAGCCTCCGCAGCCTCAGCAGCAACAGTCGCAGCAGCAGCAG
CAGCAGCAGTCGCAGCAGCAGCAGCAGCAGGCTCCACTGCACCCCCTGCCTCAGCTTGCCCAACTCCAGA
GCCAGCTTGTCCATCCTGGTCTGTTGCACTCTTCTCCCACGGCGTTCAGGGCCCCCACTTCAGCCAACTC
TACCGCCATCCTCCACCCTTCCTCCAGGCAAGGCAGCCAGCTAAATCTCAATGACCACTTGCTTGGCCAC
TCTCCAAGTTCCACAGCCACAAGTGGGCCCGGTGGAGGCAGCCGGCACCGGCAGGCCAGCCCCCTGGTGC
ACCGGCGGGACAGCAATCCCTTCACGGAGATAGCTATGAGCTCCTGCAAATACAGCGGTGGGGTCATGAA
GCCCCTCAGCCGCCTCAGCGCCTCTCGGAGAAACCTTATCGAGGCTGAGCCTGAGGGCCAACCCCTCCAG
CTCTTCAGTCCCAGCAACCCCCCAGAGATTATCATCTCCTCCAGGGAGGATAACCATGCCCACCAGACTC
TGCTCCATCACCCCAACGCTACCCACAACCACCAGCATGCCGGCACCACGGCCGGCAGCACCACCTTCCC
CAAAGCCAACAAGCGGAAAAACCAAAACATTGGCTATAAGCTGGGACACAGGAGGGCCCTGTTTGAAAAG
AGAAAGCGACTGAGTGACTATGCTCTGATTTTTGGGATGTTTGGAATTGTTGTTATGGTGATAGAGACCG
AACTGTCTTGGGGTTTGTACTCAAAGGATTCCATGTTTTCGTTGGCCCTGAAATGCCTTATCAGTTTATC
CACCGTCATCCTGCTTGGTTTGATCATCGCCTATCACACAAGGGAAGTACAGCTCTTTGTGATCGACAAT
GGTGCAGATGACTGGCGGATAGCCATGACCTACGAGCGTATCCTCTACATCAGCCTGGAGATGCTGGTGT
GCGCCATCCACCCCATCCCTGGAGAGTACAAGTTCTTCTGGACTGCACGCCTGGCCTTCTCCTATACCCC
ATCTCGGGCAGAGGCTGACGTGGACATTATTCTGTCCATCCCCATGTTCCTGCGCCTGTACCTGATCGCC
CGGGTCATGCTGCTCCATAGCAAACTCTTCACTGATGCCTCCTCCCGAAGCATCGGGGCCCTCAACAAGA
TCAACTTCAACACCCGATTCGTCATGAAGACGCTCATGACCATCTGCCCTGGCACGGTGCTGCTGGTGTT
CAGCATCTCTCTGTGGATCATCGCTGCCTGGACTGTGCGAGTCTGTGAAAGGTACCATGATCAGCAGGAT
GTAACTAGTAACTTTCTGGGTGCCATGTGGCTCATCTCCATCACGTTCCTTTCCATTGGCTATGGGGACA
TGGTGCCCCACACATACTGTGGGAAAGGTGTCTGTCTTCTCACCGGCATCATGGGTGCAGGCTGCACTGC
CCTTGTGGTAGCTGTGGTTGCCCGAAAGCTCGAACTCACCAAAGCAGAGAAGCATGTGCACAACTTCATG
ATGGACACTCAGCTCACCAAACGGATCAAGAATGCCGCCGCCAATGTCCTCCGGGAAACGTGGCTAATCT
ATAAACATACAAAGCTGCTAAAGAAGATTGACCATGCCAAAGTCAGGAAACACCAGAGGAAGTTCCTCCA
AGCTATCCACCAACTGCGGGGTGTCAAGATGGAACAAAGGAAGCTGAGTGACCAAGCCAACACCCTGGTG
GACCTTTCCAAGATGCAGAACGTCATGTATGACTTAATCACGGAGCTCAATGACCGGAGTGAAGATCTAG
AAAAGCAGATTGGCAGCCTGGAGTCCAAGCTGGAGCACCTCACAGCCAGTTTCAATTCCCTGCCCCTGCT
CATCGCAGATACCCTGCGCCAGCAGCAGCAGCAGCTGCTCACTGCCTTCGTGGAGGCCCGGGGCATCAGT
GTGGCCGTGGGAACTAGCCACGCCCCTCCCTCTGACAGCCCTATCGGGATCAGCTCCACCTCTTTCCCAA
CCCCATACACAAGTTCAAGCAGTTGCTAA

Translation (732 aa):
MDTSGHFHDSGVGDLDEDPKCPCPSSGDEQQQQQQPPPPPAPPAVPQQPPGPLLQPQPPQPQQQQSQQQQ
QQQSQQQQQQAPLHPLPQLAQLQSQLVHPGLLHSSPTAFRAPTSANSTAILHPSSRQGSQLNLNDHLLGH
SPSSTATSGPGGGSRHRQASPLVHRRDSNPFTEIAMSSCKYSGGVMKPLSRLSASRRNLIEAEPEGQPLQ
LFSPSNPPEIIISSREDNHAHQTLLHHPNATHNHQHAGTTAGSTTFPKANKRKNQNIGYKLGHRRALFEK
RKRLSDYALIFGMFGIVVMVIETELSWGLYSKDSMFSLALKCLISLSTVILLGLIIAYHTREVQLFVIDN
GADDWRIAMTYERILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLIA
RVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRVCERYHDQQD
VTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFM
MDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRGVKMEQRKLSDQANTLV
DLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEHLTASFNSLPLLIADTLRQQQQQLLTAFVEARGIS
VAVGTSHAPPSDSPIGISSTSFPTPYTSSSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH