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Report for CCDS28705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28705.1 Public Mus musculus 17 Flot1 23 108 98 CCDS HistoryNCBI Gene:14251Re-query CCDS DB by CCDS ID:28705.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001569.14 ENSMUSP00000001569.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001569.14Link to Ensembl Protein Viewer:ENSMUSP00000001569.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001569Re-query CCDS DB by Protein ID:ENSMUSP00000001569
Original member NCBI NM_008027.2 NP_032053.1 Updated not alive Link to Nucleotide Sequence:NM_008027.2Link to Protein Sequence:NP_032053.1Re-query CCDS DB by Nucleotide ID:NM_008027Re-query CCDS DB by Protein ID:NP_032053
Current member NCBI NM_008027.3 NP_032053.1 Accepted alive Link to Nucleotide Sequence:NM_008027.3Link to Protein Sequence:NP_032053.1Re-query CCDS DB by Nucleotide ID:NM_008027Re-query CCDS DB by Protein ID:NP_032053Link to BLAST:NP_032053.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032053.1 428 O08917 428 100% 0 0

Chromosomal Locations for CCDS 28705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35823821 35823863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35824127 35824202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35824279 35824369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35824566 35824709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35824833 35824952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35825431 35825526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35825738 35825890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35829843 35830024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35830119 35830164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35830654 35830791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35830943 35831107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35832507 35832539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGTTTTTCACTTGTGGCCCAAATGAGGCCATGGTGGTCTCCGGGTTCTGCAGGAGCCCCCCAGTCATGG
TGGCCGGAGGCCGAGTGTTTGTCCTACCCTGCATTCAGCAAATCCAGAGGATCTCTCTCAACACACTGAC
CCTCAATGTCAAGAGTGAAAAGGTTTATACCCGCCACGGGGTCCCCATCTCAGTCACGGGCATTGCCCAG
GTGAAAATCCAGGGCCAGAACAAGGAGATGCTGGCAGCTGCCTGCCAGATGTTCCTGGGGAAGACAGAGG
CGGAGATTGCCCACATTGCCCTGGAGACACTGGAAGGCCACCAGAGGGCAATCATGGCCCACATGACTGT
GGAGGAGATCTATAAGGATAGACAGAAATTCTCAGAGCAGGTTTTCAAAGTGGCCTCCTCCGACCTGGTC
AACATGGGTATCAGCGTGGTTAGCTACACTTTGAAGGATATTCATGATGACCAGGATTACTTACACTCGT
TAGGAAAGGCTCGCACGGCACAAGTCCAAAAAGATGCTCGGATTGGCGAAGCAGAGGCCAAGAGAGATGC
CGGGATACGGGAGGCTAAGGCCAAGCAGGAGAAGGTATCTGCACAGTGCCTCAGTGAAATAGAGATGGCC
AAGGCACAGAGGGACTATGAGCTGAAGAAAGCCACCTACGACATCGAGGTCAACACCCGGCGAGCACAGG
CTGACCTGGCCTATCAGCTGCAGGTGGCCAAGACGAAGCAGCAGATCGAGGAGCAGCGGGTGCAGGTGCA
GGTGGTTGAGCGCGCCCAGCAGGTGGCAGTGCAGGAGCAGGAGATCGCCCGGCGCGAGAAGGAGTTGGAG
GCTCGCGTGCGCAAGCCAGCAGAGGCTGAGCGCTACAGGCTGGAGCGCCTGGCGGAAGCAGAGAAGGCCC
AGCTGATCATGCAGGCAGAAGCCGAAGCTGAGTCTGTGCGGATGCGAGGGGAAGCTGAGGCCTTTGCTAT
AGGTGCCCGCGCTCGTGCTGAGGCTGAGCAAATGGCCAAGAAGGCAGAAGCCTTCCAGATGTACCAGGAG
GCCGCCCAGCTGGACATGCTGCTGGAGAAACTGCCCCAGGTGGCAGAAGAGATCAGTGGTCCCCTGACCT
CAGCCAATAAGATCACGCTGGTGTCTAGTGGAAGCGGAACCATGGGGGCAGCCAAAGTTACTGGGGAAGT
ACTGGACATCTTGAGCCGCCTGCCGGAGAGTGTGGAGAGGCTCACAGGCGTCAGCATCTCCCAGGTAAAT
CACAACAAGCCTTTAAGGACAGCGTGA

Translation (428 aa):
MFFTCGPNEAMVVSGFCRSPPVMVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPISVTGIAQ
VKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEIYKDRQKFSEQVFKVASSDLV
NMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGEAEAKRDAGIREAKAKQEKVSAQCLSEIEMA
KAQRDYELKKATYDIEVNTRRAQADLAYQLQVAKTKQQIEEQRVQVQVVERAQQVAVQEQEIARREKELE
ARVRKPAEAERYRLERLAEAEKAQLIMQAEAEAESVRMRGEAEAFAIGARARAEAEQMAKKAEAFQMYQE
AAQLDMLLEKLPQVAEEISGPLTSANKITLVSSGSGTMGAAKVTGEVLDILSRLPESVERLTGVSISQVN
HNKPLRTA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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