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Report for CCDS28852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28852.1 Public Mus musculus 17 Usp49 23 108 98 CCDS HistoryNCBI Gene:224836Re-query CCDS DB by CCDS ID:28852.1Re-query CCDS DB by GeneID:224836See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024779.14 ENSMUSP00000024779.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024779.14Link to Ensembl Protein Viewer:ENSMUSP00000024779.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024779Re-query CCDS DB by Protein ID:ENSMUSP00000024779
Original member Current member NCBI NM_198421.2 NP_940813.1 Accepted alive Link to Nucleotide Sequence:NM_198421.2Link to Protein Sequence:NP_940813.1Re-query CCDS DB by Nucleotide ID:NM_198421Re-query CCDS DB by Protein ID:NP_940813Link to BLAST:NP_940813.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940813.1 685 Q6P9L4 685 100% 0 0

Chromosomal Locations for CCDS 28852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47672072 47673418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47674716 47674920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47678844 47678952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47679664 47679869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47680682 47680872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGATAGATGCAAACATGTAGGGCGGTTACGGCTCGCCCAGGACCACTCCATCCTGAATCCCCAGAAGT
GGTGCTGTCTGCAGTGCGCCACCACCGAGTCTGCGTGGGCCTGCCTCAAGTGCTCCCACGTGGCCTGCGG
CCGCTACATTGAAGACCATGCACTAAAACACTTTGAAGAGACAGGACACCCGCTGGCCATGGAGGTCCGG
GACCTCTACGTGTTCTGCTACCTGTGCAAGGACTACGTGCTCAATGACAACCCGGAGGGGGACCTGAAGT
TGCTGAGAAGCTCCCTCCTGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACGCT
GCGGTCCACAGCTGCGGGCGAGGACGTGGTCCCGCCACAGCGCACTCCTCAGGGACAGCCGCAGATGCTC
ACGGCTCTGTGGTACCGGCGCCAGCGCCTGCTGGCCAAGACGCTGCGGCTCTGGTTCCAGAAGAGCTCCC
GCGGCCGGGCGCAGCTGGAGCAGCGGCGGCAGGAGGAGGCGCTGGAGCGCAAGAAGGAGGCGGCGCGGCA
GCGGCGCCGCGAGGTCAAGCGGCGGCTGCTGGAGGAGCTGGCCAGTGCGCCGCCGCGGAAGAGTGCGCGC
CTGCTCCTGCACGCTCCCGGGCCCGTGGCCGTGCGCCCTGCCACCCTCGCTACCTCCCGGCGCTTGTCCG
CAGCTGCCCTCAATCCGCGCCGCCAGCCGGCGGTGGCCCCAGGTGTCACCGGCCTGCGCAACCTGGGGAA
TACCTGCTACATGAACTCCATCCTCCAAGTGCTCAGCCACCTCCAGAAGTTCCGGGAATGTTTCCTGAAC
CTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGC
CAGCCAGCAGCTCTGCCGCAGAGTTGTCAGTAAGGAGTGTCCGGGCCCAGGGCTGCGAACCTCAGGGCCT
CTGCTGGAGCAGCGGAGCCTCCATCAGCAGGAGCCTGGAGCTCATTCAGAACAAGGAACCCAGCTCAAAG
CACATTTCCCTCTGCCACGAACTGCACACCCTCTTCCGAGTCATGTGGTCTGGGAAGTGGGCGCTGGTAT
CACCCTTTGCCATGCTTCACTCCGTGTGGAGCCTGATTCCCGCCTTCCGTGGCTACGACCAGCAGGATGC
GCAGGAATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGAGGGTTCCACACGCAGG
ATCCTCATCCCATTCTCCCAGAGGAAGCTCACCAAACAGGTCTTAAAGGTGGTGAACACCATATTTCATG
GGCAGCTGCTCAGTCAGGTCACATGTATATCATGCAATTATAAATCCAATACCATTGAGCCCTTTTGGGA
TCTGTCCCTGGAATTCCCTGAACGATACCACTGCATAGAAAAGGGGTTTGTCCCTTTGAATCAGACAGAG
TGCCTGCTCACTGAGATGCTAGCCAAGTTCACCGAGACAGAGGCCCTGGAGGGGAGAATCTACGCTTGTG
ACCAGTGTAACAGCAAACGACGAAAGTCCAACCCCAAACCCCTTGTTCTGAGTGAAGCTAGGAAGCAGTT
AATGATCTACAGACTACCTCAGGTCCTCCGGCTACACCTTAAAAGATTCAGGTGGTCTGGCCGTAACCAT
CGTGAGAAGATTGGGGTCCATGTCATCTTTGACCAGGTATTAACCATGGAACCTTACTGCTGCAGGGACA
TGCTCTCCTCTCTTGACAAAGAGACCTTTGCCTATGATCTCTCCGCAGTGGTCATGCATCACGGGAAAGG
GTTTGGCTCAGGACACTACACAGCCTATTGCTACAACACAGAGGGAGGTTTTTGGGTCCACTGCAATGAC
TCAAAGCTGGATGTATGCAGTGTCGAGGAAGTGTGCAAAACCCAGGCCTACATTCTTTTTTACACTCGAA
GAACAGTTCAGGGCAGCGCAAAACTCTCAGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAGCAAGGA
CGAACGCAGAACATACACATTGCCCTGA

Translation (685 aa):
MDRCKHVGRLRLAQDHSILNPQKWCCLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVR
DLYVFCYLCKDYVLNDNPEGDLKLLRSSLLAVRGQKQDLLARRGRTLRSTAAGEDVVPPQRTPQGQPQML
TALWYRRQRLLAKTLRLWFQKSSRGRAQLEQRRQEEALERKKEAARQRRREVKRRLLEELASAPPRKSAR
LLLHAPGPVAVRPATLATSRRLSAAALNPRRQPAVAPGVTGLRNLGNTCYMNSILQVLSHLQKFRECFLN
LDPSTSEHLFPQATNGKAQLSGRPASSSAAELSVRSVRAQGCEPQGLCWSSGASISRSLELIQNKEPSSK
HISLCHELHTLFRVMWSGKWALVSPFAMLHSVWSLIPAFRGYDQQDAQEFLCELLHKVQQELESEGSTRR
ILIPFSQRKLTKQVLKVVNTIFHGQLLSQVTCISCNYKSNTIEPFWDLSLEFPERYHCIEKGFVPLNQTE
CLLTEMLAKFTETEALEGRIYACDQCNSKRRKSNPKPLVLSEARKQLMIYRLPQVLRLHLKRFRWSGRNH
REKIGVHVIFDQVLTMEPYCCRDMLSSLDKETFAYDLSAVVMHHGKGFGSGHYTAYCYNTEGGFWVHCND
SKLDVCSVEEVCKTQAYILFYTRRTVQGSAKLSEPHLQAQVHSSSKDERRTYTLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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