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Report for CCDS22263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22263.1 Public Mus musculus 8 Frg1 23 108 98 CCDS HistoryNCBI Gene:14300Re-query CCDS DB by CCDS ID:22263.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033999.7 ENSMUSP00000033999.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033999.7Link to Ensembl Protein Viewer:ENSMUSP00000033999.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033999Re-query CCDS DB by Protein ID:ENSMUSP00000033999
Original member Current member NCBI NM_013522.3 NP_038550.2 Accepted alive Link to Nucleotide Sequence:NM_013522.3Link to Protein Sequence:NP_038550.2Re-query CCDS DB by Nucleotide ID:NM_013522Re-query CCDS DB by Protein ID:NP_038550Link to BLAST:NP_038550.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038550.2 258 P97376 258 100% 0 0

Chromosomal Locations for CCDS 22263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 41397608 41397644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41398956 41399066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41399565 41399656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41400762 41400866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41407645 41407759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41410264 41410321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41411223 41411348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41414803 41414873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41416900 41416961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGCCGAATATTCCTATGTAAAGTCCACCAAACTCGTGCTCAAGGGCACTAAAGCCAAGAGTAAAAAGA
AAAAGAGCAAAGATAAGAAGAGAAAACGGGAAGAAGACGAGGAGACCCAACTTGATATTGTGGGAATCTG
GTGGACTGTATCCAACTTTGGGGAGATTTCAGGAACTATTGCCATTGAAATGGATAAAGGAGCCTATATC
CATGCACTGGACAATGGACTGTTTACACTGGGAGCTCCACACAGAGAAGTTGATGAAGGCCCCAGTCCTC
CAGAGCAGTTTACTGCTGTCAAGTTGTCTGACTCCAGAATTGCCCTGAAGTCTGGCTATGGAAAATATCT
TGGTATAAATTCAGATGGACTTGTTGTTGGGCGTTCGGATGCAATTGGGCCCAGAGAACAATGGGAACCA
GTGTTTCAAGATGGGAAGATGGCTTTACTGGCCTCAAATAGCTGCTTTATTAGATGTAATGAAGCAGGCG
ATATAGAAGCAAAGAATAAGACGGCAGGAGAAGAAGAAATGATAAAGATCAGATCCTGTGCGGAAAGAGA
AACCAAGAAAAAGGATGACATCCCAGAAGAAGACAAGGGAAGTGTGAAGCAGTGTGAAATCAACTATGTA
AAGAAATTTCAGAGCTTCCAGGACCACAAACTCAAAATAAGCAAAGAAGATAGTAAAATTCTTAAAAAGG
CTCGGAAAGATGGATTTTTACATGAGACACTTCTGGACAGGAGAGCCAAATTGAAAGCTGACCGATACTG
CAAGTGA

Translation (258 aa):
MAEYSYVKSTKLVLKGTKAKSKKKKSKDKKRKREEDEETQLDIVGIWWTVSNFGEISGTIAIEMDKGAYI
HALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEP
VFQDGKMALLASNSCFIRCNEAGDIEAKNKTAGEEEMIKIRSCAERETKKKDDIPEEDKGSVKQCEINYV
KKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRAKLKADRYCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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