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Report for CCDS23851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23851.1 Public Mus musculus 10 Gja1 23 108 98 CCDS HistoryNCBI Gene:14609Re-query CCDS DB by CCDS ID:23851.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068581.8 ENSMUSP00000064536.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068581.8Link to Ensembl Protein Viewer:ENSMUSP00000064536.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068581Re-query CCDS DB by Protein ID:ENSMUSP00000064536
Original member Current member EBI ENSMUST00000220069.1 ENSMUSP00000151620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220069.1Link to Ensembl Protein Viewer:ENSMUSP00000151620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220069Re-query CCDS DB by Protein ID:ENSMUSP00000151620
Original member NCBI NM_010288.3 NP_034418.1 Updated not alive Link to Nucleotide Sequence:NM_010288.3Link to Protein Sequence:NP_034418.1Re-query CCDS DB by Nucleotide ID:NM_010288Re-query CCDS DB by Protein ID:NP_034418
Current member NCBI NM_010288.4 NP_034418.1 Accepted alive Link to Nucleotide Sequence:NM_010288.4Link to Protein Sequence:NP_034418.1Re-query CCDS DB by Nucleotide ID:NM_010288Re-query CCDS DB by Protein ID:NP_034418Link to BLAST:NP_034418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034418.1 382 P23242 382 100% 0 0

Chromosomal Locations for CCDS 23851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 56387547 56388695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGTGACTGGAGCGCCTTGGGGAAGCTGCTGGACAAGGTCCAAGCCTACTCCACGGCCGGAGGGAAGG
TGTGGCTGTCGGTGCTCTTCATTTTCAGAATCCTGCTCCTGGGGACAGCGGTTGAGTCAGCTTGGGGTGA
TGAACAGTCTGCCTTTCGCTGTAACACTCAACAACCCGGTTGTGAAAATGTCTGCTATGACAAGTCCTTC
CCCATCTCTCACGTGCGCTTCTGGGTCCTTCAGATCATATTCGTGTCTGTGCCCACACTCCTGTACTTGG
CTCACGTGTTCTATGTGATGAGAAAGGAAGAGAAGCTGAACAAGAAAGAAGAGGAGCTCAAAGTGGCGCA
GACCGACGGGGTCAACGTGGAGATGCACCTGAAGCAGATTGAAATCAAGAAGTTCAAGTATGGGATTGAA
GAACACGGCAAGGTGAAGATGAGAGGTGGCCTGCTGAGAACCTACATCATCAGCATCCTCTTCAAGTCTG
TCTTCGAGGTGGCCTTCCTGCTGATCCAGTGGTACATCTATGGGTTCAGCCTGAGTGCGGTCTACACCTG
CAAGAGAGATCCCTGCCCCCACCAGGTGGACTGCTTCCTCTCACGTCCCACGGAGAAAACCATCTTCATC
ATCTTCATGCTGGTGGTGTCCTTGGTGTCTCTCGCTCTGAATATCATTGAGCTCTTCTATGTCTTCTTCA
AGGGCGTTAAGGATCGCGTGAAGGGAAGAAGCGATCCTTACCACGCCACCACCGGCCCACTGAGCCCATC
CAAAGACTGCGGATCTCCAAAATATGCTTACTTCAATGGCTGCTCCTCACCAACGGCCCCACTCTCACCT
ATGTCTCCTCCTGGGTACAAGCTGGTCACTGGTGACAGAAACAATTCCTCCTGCCGCAATTACAACAAGC
AAGCCAGCGAGCAAAACTGGGCGAATTACAGCGCAGAGCAAAATCGAATGGGGCAGGCCGGAAGCACCAT
CTCCAACTCCCACGCCCAGCCGTTTGATTTCCCTGACGACAGCCAAAATGCCAAAAAAGTTGCTGCTGGA
CACGAACTCCAGCCCTTAGCTATCGTGGATCAGCGACCTTCCAGCAGAGCCAGCAGCCGCGCCAGCAGCA
GACCTCGGCCTGATGACCTGGAGATTTAA

Translation (382 aa):
MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPGCENVCYDKSF
PISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDGVNVEMHLKQIEIKKFKYGIE
EHGKVKMRGGLLRTYIISILFKSVFEVAFLLIQWYIYGFSLSAVYTCKRDPCPHQVDCFLSRPTEKTIFI
IFMLVVSLVSLALNIIELFYVFFKGVKDRVKGRSDPYHATTGPLSPSKDCGSPKYAYFNGCSSPTAPLSP
MSPPGYKLVTGDRNNSSCRNYNKQASEQNWANYSAEQNRMGQAGSTISNSHAQPFDFPDDSQNAKKVAAG
HELQPLAIVDQRPSSRASSRASSRPRPDDLEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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