NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19030.1 Public Mus musculus 4 Gnb1 23 108 98 CCDS HistoryNCBI Gene:14688Re-query CCDS DB by CCDS ID:19030.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030940.13 ENSMUSP00000030940.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030940.13Link to Ensembl Protein Viewer:ENSMUSP00000030940.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030940Re-query CCDS DB by Protein ID:ENSMUSP00000030940
Original member Current member EBI ENSMUST00000105616.9 ENSMUSP00000101241.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105616.9Link to Ensembl Protein Viewer:ENSMUSP00000101241.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105616Re-query CCDS DB by Protein ID:ENSMUSP00000101241
Original member Current member EBI ENSMUST00000165335.7 ENSMUSP00000130123.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165335.7Link to Ensembl Protein Viewer:ENSMUSP00000130123.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165335Re-query CCDS DB by Protein ID:ENSMUSP00000130123
Original member Current member EBI ENSMUST00000176637.1 ENSMUSP00000135091.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176637.1Link to Ensembl Protein Viewer:ENSMUSP00000135091.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176637Re-query CCDS DB by Protein ID:ENSMUSP00000135091
Original member NCBI NM_001160016.1 NP_001153488.1 Updated not alive Link to Nucleotide Sequence:NM_001160016.1Link to Protein Sequence:NP_001153488.1Re-query CCDS DB by Nucleotide ID:NM_001160016Re-query CCDS DB by Protein ID:NP_001153488
Current member NCBI NM_001160016.2 NP_001153488.1 Accepted alive Link to Nucleotide Sequence:NM_001160016.2Link to Protein Sequence:NP_001153488.1Re-query CCDS DB by Nucleotide ID:NM_001160016Re-query CCDS DB by Protein ID:NP_001153488Link to BLAST:NP_001153488.1
Original member NCBI NM_001160017.1 NP_001153489.1 Updated not alive Link to Nucleotide Sequence:NM_001160017.1Link to Protein Sequence:NP_001153489.1Re-query CCDS DB by Nucleotide ID:NM_001160017Re-query CCDS DB by Protein ID:NP_001153489
Current member NCBI NM_001160017.2 NP_001153489.1 Accepted alive Link to Nucleotide Sequence:NM_001160017.2Link to Protein Sequence:NP_001153489.1Re-query CCDS DB by Nucleotide ID:NM_001160017Re-query CCDS DB by Protein ID:NP_001153489Link to BLAST:NP_001153489.1
Original member NCBI NM_008142.4 NP_032168.1 Updated not alive Link to Nucleotide Sequence:NM_008142.4Link to Protein Sequence:NP_032168.1Re-query CCDS DB by Nucleotide ID:NM_008142Re-query CCDS DB by Protein ID:NP_032168
Current member NCBI NM_008142.5 NP_032168.1 Accepted alive Link to Nucleotide Sequence:NM_008142.5Link to Protein Sequence:NP_032168.1Re-query CCDS DB by Nucleotide ID:NM_008142Re-query CCDS DB by Protein ID:NP_032168Link to BLAST:NP_032168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153488.1 340 P62874 340 100% 0 0
NP_001153489.1 340 P62874 340 100% 0 0
NP_032168.1 340 P62874 340 100% 0 0

Chromosomal Locations for CCDS 19030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155527453 155527509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155533697 155533735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155535358 155535464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155540556 155540619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155543031 155543193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155551655 155551721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155553318 155553519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155555015 155555231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155557171 155557277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAGTGAACTTGACCAGCTGCGGCAGGAGGCCGAGCAACTGAAGAACCAAATTAGAGATGCTCGTAAAG
CGTGTGCCGATGCGACTCTTTCTCAGATCACAAACAATATTGATCCAGTGGGAAGAATCCAAATGCGGAC
CAGGAGAACACTGAGGGGGCATCTGGCAAAGATTTATGCCATGCACTGGGGCACAGACTCAAGGCTCCTT
GTCAGCGCCTCTCAGGATGGAAAACTCATCATCTGGGACAGTTATACCACAAACAAGGTTCATGCCATCC
CTCTGCGCTCCTCTTGGGTCATGACCTGCGCATACGCTCCTTCTGGGAATTATGTGGCCTGTGGTGGCCT
GGATAACATCTGCTCCATTTACAACCTGAAAACTCGTGAAGGGAATGTGCGTGTGAGTCGTGAGCTGGCG
GGACACACAGGTTATCTGTCCTGTTGCCGGTTCCTGGATGACAATCAGATAGTTACCAGTTCTGGAGACA
CCACATGTGCCCTGTGGGACATCGAGACTGGCCAGCAGACAACCACATTTACTGGACACACTGGAGATGT
CATGAGCCTGTCTCTTGCTCCTGACACCAGACTGTTTGTCTCTGGTGCTTGTGATGCTTCAGCCAAGCTC
TGGGATGTCCGAGAAGGGATGTGCCGGCAGACCTTTACAGGACACGAGTCTGACATCAATGCCATATGTT
TCTTTCCCAATGGCAATGCCTTTGCCACTGGCTCAGACGATGCCACATGCAGGCTGTTTGACCTCCGTGC
AGACCAGGAGCTCATGACCTACTCCCATGACAACATTATCTGTGGTATCACATCTGTTTCCTTCTCCAAG
AGTGGCCGCCTCCTCCTTGCTGGGTATGATGACTTCAACTGTAATGTCTGGGATGCACTCAAAGCTGACA
GAGCAGGTGTCTTAGCTGGACACGACAACCGAGTCAGCTGCTTGGGGGTGACTGATGATGGCATGGCTGT
GGCAACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTAA

Translation (340 aa):
MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLL
VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA
GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL
WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK
SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH