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Report for CCDS26270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26270.1 Public Mus musculus 13 Gpx5 23 108 98 CCDS HistoryNCBI Gene:14780Re-query CCDS DB by CCDS ID:26270.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110491.8 ENSMUSP00000106117.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110491.8Link to Ensembl Protein Viewer:ENSMUSP00000106117.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110491Re-query CCDS DB by Protein ID:ENSMUSP00000106117
Original member Current member NCBI NM_010343.2 NP_034473.2 Accepted alive Link to Nucleotide Sequence:NM_010343.2Link to Protein Sequence:NP_034473.2Re-query CCDS DB by Nucleotide ID:NM_010343Re-query CCDS DB by Protein ID:NP_034473Link to BLAST:NP_034473.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034473.2 221 P21765 221 100% 0 0

Chromosomal Locations for CCDS 26270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21287366 21287572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21288704 21288803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21289216 21289333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21291314 21291467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21292574 21292660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGTTACAGAGTTAAGAGTCTTCTATCTTGTTCCACTTCTTCTAGCCAGCTATGTGCAGACAACCCCCA
GGCCGGAAAAGATGAAGATGGACTGCTACAAAGATGTGAAAGGCACCATCTACGACTATGAGGCTCTGTC
TCTTAATGGGAAGGAACACATTCCATTCAAGCAGTATGCAGGAAAGCACGTCCTCTTTGTCAATGTGGCT
ACCTATTGCGGTCTGACAATCCAGTACCCTGAGCTGAATGCACTCCAGGAGGATCTGAAGCCATTTGGCT
TGGTTATATTGGGCTTTCCCTGCAACCAATTTGGAAAGCAAGAACCAGGAGACAATTTAGAGATTCTTCC
TGGGCTCAAGTATGTTCGTCCAGGAAAAGGGTTTTTACCTAACTTCCAGCTTTTTGCAAAAGGGGATGTA
AATGGTGAAAACGAGCAGAAAATCTTCACCTTCTTGAAGCGTTCTTGTCCTCACCCCTCAGAGACTGTGG
TCATGAGCAAACATACCTTCTGGGAGCCAATAAAAGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCT
GGTGGGACCCGATGGCATCCCTGTCATGCGCTGGTTCCACCAGGCTCCTGTCAGCACTGTCAAGTCTGAC
ATCATGGCGTACCTGAGCCATTTCAAAACCATATAG

Translation (221 aa):
MVTELRVFYLVPLLLASYVQTTPRPEKMKMDCYKDVKGTIYDYEALSLNGKEHIPFKQYAGKHVLFVNVA
TYCGLTIQYPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDV
NGENEQKIFTFLKRSCPHPSETVVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIPVMRWFHQAPVSTVKSD
IMAYLSHFKTI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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