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Report for CCDS39482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39482.1 Public Mus musculus 6 Tmem176a 23 108 98 CCDS HistoryNCBI Gene:66058Re-query CCDS DB by CCDS ID:39482.1Re-query CCDS DB by GeneID:66058See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101426.10 ENSMUSP00000098969.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101426.10Link to Ensembl Protein Viewer:ENSMUSP00000098969.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101426Re-query CCDS DB by Protein ID:ENSMUSP00000098969
Original member Current member EBI ENSMUST00000168406.3 ENSMUSP00000131775.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168406.3Link to Ensembl Protein Viewer:ENSMUSP00000131775.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168406Re-query CCDS DB by Protein ID:ENSMUSP00000131775
Original member Current member EBI ENSMUST00000204482.2 ENSMUSP00000145101.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204482.2Link to Ensembl Protein Viewer:ENSMUSP00000145101.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204482Re-query CCDS DB by Protein ID:ENSMUSP00000145101
Original member Current member NCBI NM_001098271.1 NP_001091741.1 Accepted alive Link to Nucleotide Sequence:NM_001098271.1Link to Protein Sequence:NP_001091741.1Re-query CCDS DB by Nucleotide ID:NM_001098271Re-query CCDS DB by Protein ID:NP_001091741Link to BLAST:NP_001091741.1
Original member Current member NCBI NM_025326.4 NP_079602.4 Accepted alive Link to Nucleotide Sequence:NM_025326.4Link to Protein Sequence:NP_079602.4Re-query CCDS DB by Nucleotide ID:NM_025326Re-query CCDS DB by Protein ID:NP_079602Link to BLAST:NP_079602.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091741.1 244 Q9DCS1 244 100% 0 0
NP_079602.4 244 Q9DCS1 244 100% 0 0

Chromosomal Locations for CCDS 39482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48842207 48842401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48842589 48842699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48843785 48843841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48843961 48844179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48844668 48844778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48845104 48845145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGTCCACAGACATGGAGACTGCAGTCGTCGGCAAGGTGGACCCTGAGGCTCCACAACCCACCCACATTG
ATGTGCACATCCACCAGGAGTCTGCTCTGGCCAAACTTCTGCTGGCCGGATGCTCATTGCTAAGGATTCC
AGCATCCGCTTCCACCCAGAGCCAGGGCAGCAGCAGAGTGCTGGTGGCCTCCTGGGTGGTGCAGACTGTG
CTGGGGGCTCTGAGTGTGGTTCTGGGTGGAACCCTCTACATAGGCCATTATTTAGCCATGTATTCCGAAG
GCGCCCCCTTCTGGACTGGGATCGTGGCTATGCTGGCTGGAGCTGTTGCCTTCCTTCACAAGAAACGGGG
TGGTACCTGCTGGGCCCTGATGAGGACCCTTCTTGTGCTGGCAAGTTTCTGCACCGCTGTGGCTGCCATC
GTTATTGGGTCTCGTGAGTTGAATTTTTACTGGTATTTTCTCGGAGATGATGTCTGTCAAAGAGACTCTT
CATATGGATGGTCCACCATGCCTAGAACCACTCCAGTTCCCGAAGAAGCTGATAGGATTGCCTTGTGCAT
ATACTACACAAGCATGCTAAAGACCCTGCTCATGAGCCTCCAAGCTATGCTCTTGGGTATCTGGGTGCTG
CTGCTCCTGGCTTCTCTCACCCCTGTATGTGTCTACATCTGGAAAAGATTTTTCACAAAGGCGGAAACAG
AGGAGAAGAAACTGCTGGGTGCAGCTGTGATCTAG

Translation (244 aa):
MSTDMETAVVGKVDPEAPQPTHIDVHIHQESALAKLLLAGCSLLRIPASASTQSQGSSRVLVASWVVQTV
LGALSVVLGGTLYIGHYLAMYSEGAPFWTGIVAMLAGAVAFLHKKRGGTCWALMRTLLVLASFCTAVAAI
VIGSRELNFYWYFLGDDVCQRDSSYGWSTMPRTTPVPEEADRIALCIYYTSMLKTLLMSLQAMLLGIWVL
LLLASLTPVCVYIWKRFFTKAETEEKKLLGAAVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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