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Report for CCDS42298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42298.1 Public Homo sapiens 17 C17orf50 24 110 108 CCDS HistoryNCBI Gene:146853Re-query CCDS DB by CCDS ID:42298.1Re-query CCDS DB by GeneID:146853See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000605587.2 ENSP00000475146.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000605587.2Link to Ensembl Protein Viewer:ENSP00000475146.1Re-query CCDS DB by Nucleotide ID:ENST00000605587Re-query CCDS DB by Protein ID:ENSP00000475146
Original member Current member NCBI NM_145272.4 NP_660315.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145272.4Link to Protein Sequence:NP_660315.2Re-query CCDS DB by Nucleotide ID:NM_145272Re-query CCDS DB by Protein ID:NP_660315Link to BLAST:NP_660315.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660315.2 174 Q8WW18 174 100% 0 0

Chromosomal Locations for CCDS 42298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35760942 35760954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35764007 35764325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35764426 35764618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGATAAGCATGGTGTGAAGACCCCCTTGTGGAAGAAGGAAACGGAAGAGCTCCGGGCCGAGGACGCGG
AGCAAGAGGAAGGGAAGGAGGGGTCGGAGGACGAGGACGAGGACAACCAGAGGCCGCTGGAGGACAGCGC
GACGGAGGGCGAGGAGCCGCCGCGGGTAGCGGAGGAGGGCGAAGGCCGCGAGCGGCGCTCAGTGTCCTAC
TGCCCGCTGCGCCAGGAGTCCAGCACCCAGCAGGTGGCGCTGCTGCGGCGCGCGGACAGCGGCTTCTGGG
GCTGGCTCGGCCCCTTAGCGCTGCTGGGCGGCCTAACAGCTCCCACCGACAGGAAGCGGAGCCTCCCGGA
GGAGCCGTGCGTGCTGGAGATCCGGCGACGACCGCCGCGCCGCGGGGGCTGTGCTTGCTGCGAGCTCCTC
TTCTGCAAGAAATGCAGGAGTCTGCACAGCCACCCAGCCTATGTGGCGCACTGCGTTCTGGATCACCCGG
ATCTGGGTAAGGCGGGGGCCGCTGGGAACTCCTGA

Translation (174 aa):
MDKHGVKTPLWKKETEELRAEDAEQEEGKEGSEDEDEDNQRPLEDSATEGEEPPRVAEEGEGRERRSVSY
CPLRQESSTQQVALLRRADSGFWGWLGPLALLGGLTAPTDRKRSLPEEPCVLEIRRRPPRRGGCACCELL
FCKKCRSLHSHPAYVAHCVLDHPDLGKAGAAGNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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