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Report for CCDS47647.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47647.2 Public Homo sapiens 7 DLX6 24 110 108 CCDS HistoryNCBI Gene:1750Re-query CCDS DB by CCDS ID:47647.2Re-query CCDS DB by GeneID:1750See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 47647.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and homology data. It should be noted that there are no full-length human transcripts spanning the first exon of this update, but it is supported by tiled EST data and by mouse mRNA EF535989.1.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47647.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518156.3 ENSP00000428480.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518156.3Link to Ensembl Protein Viewer:ENSP00000428480.2Re-query CCDS DB by Nucleotide ID:ENST00000518156Re-query CCDS DB by Protein ID:ENSP00000428480
Original member Current member NCBI NM_005222.4 NP_005213.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005222.4Link to Protein Sequence:NP_005213.3Re-query CCDS DB by Nucleotide ID:NM_005222Re-query CCDS DB by Protein ID:NP_005213Link to BLAST:NP_005213.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005213.3 293 P56179-3 293 100% 0 0

Chromosomal Locations for CCDS 47647.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97005978 97006413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97007638 97007831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97009796 97010047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGATGACCATGACTACGATGGCTGACGGCTTGGAAGGCCAGGACTCGTCCAAATCCGCCTTCATGGAGT
TCGGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCAGCCGCACTCGCAGCAGAGCTCCCCGGCCATGGCAGGCGCGCACTACCCT
CTGCACTGCCTGCACTCGGCGGCGGCGGCGGCAGCGGCCGGCTCGCACCACCACCACCACCACCAGCACC
ACCACCACGGCTCGCCCTACGCGTCGGGCGGAGGGAACTCCTACAACCACCGCTCGCTCGCCGCCTACCC
CTACATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCAGCCGCCCAGACG
CGAGGGGACGACACAGATCAACAAAAAACTACAGTGATTGAAAACGGGGAAATCAGGTTCAATGGAAAAG
GGAAAAAGATTCGGAAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCA
GCAGACACAGTATCTGGCCCTTCCAGAGAGAGCCGAACTGGCAGCTTCCTTAGGACTGACACAAACACAG
GTGAAGATATGGTTTCAGAACAAACGCTCTAAGTTTAAGAAACTGCTGAAGCAGGGCAGTAATCCTCATG
AGAGCGACCCCCTCCAGGGCTCGGCGGCCCTGTCGCCACGCTCGCCAGCGCTGCCTCCAGTCTGGGACGT
TTCTGCCTCGGCCAAGGGTGTCAGTATGCCCCCCAACAGCTACATGCCTGGCTATTCTCACTGGTACTCC
TCTCCACACCAGGACACGATGCAGAGACCACAGATGATGTGA

Translation (293 aa):
MMTMTTMADGLEGQDSSKSAFMEFGQQQQQQQQQQQQQQQQQQQPPPPPPPPPQPHSQQSSPAMAGAHYP
LHCLHSAAAAAAAGSHHHHHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQT
RGDDTDQQKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQ
VKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMPGYSHWYS
SPHQDTMQRPQMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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