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Report for CCDS27924.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27924.1 |
Public |
Mus musculus |
16 |
Hmox2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:15369](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:27924.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 27924.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000004172.14 |
ENSMUSP00000004172.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000004172.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000004172.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000004172](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000004172](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000120232.7 |
ENSMUSP00000112397.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000120232.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000112397.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000120232](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000112397](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000118885.7 |
ENSMUSP00000113110.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000118885.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000113110.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000118885](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000113110](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001136066.2 |
NP_001129538.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001136066.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001129538.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001136066](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001129538](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001129538.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_010443.2 |
NP_034573.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_010443.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_034573.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_010443](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_034573](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_034573.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 27924.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (948 nt): ATGTCTTCAGAGGTGGAGACCTCGGAGGGGGTAGATGAGTCAGAGAAGAACTCTATGGCACCAGAAAAGG AAAACCATACCAAAATGGCAGACCTTTCTGAGCTCCTGAAGGAAGGGACCAAGGAAGCACATGACCGAGC AGAAAATACCCAGTTTGTCAAAGACTTCTTGAAAGGAAACATTAAGAAGGAGCTATTTAAGCTGGCCACC ACTGCACTTTACTTCACATACTCAGCCCTTGAGGAGGAAATGGACCGCAACAAGGACCACCCAGCCTTCG CCCCCTTATATTTCCCCACGGAGCTACACCGGAAGGCAGCACTGATCAAGGACATGAAGTATTTCTTTGG TGAAAACTGGGAGGAGCAGGTGAAGTGCTCTGAGGCTGCCCAGAAGTATGTGGATCGGATTCACTATGTA GGGCAAAATGAGCCAGAGCTGCTGGTGGCCCATGCTTATACTCGTTACATGGGGGACCTTTCAGGAGGCC AGGTACTGAAGAAGGTTGCCCAGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGACCCAATTCTACCT GTTTGAGCATGTGGACAATGCCCAGCAATTCAAGCAGTTCTACCGCGCTAGAATGAATGCCTTGGACCTG AATTTGAAGACCAAAGAGAGGATTGTGGAGGAGGCCAATAAAGCCTTTGAATATAACATGCAGATATTCA GTGAACTGGACCAGGCTGGCTCCATGCTAGCAAGAGAAACCCTGGAGGATGGGCTCCCGGTACATGATGG GAAGGGAGATATACGTAAATGCCCCTTTTATGCTGCTCAGCCAGACAAAGGTACACTAGGAGGCAGCAAC TGCCCCTTCCAGACAACCGTGGCTGTGCTGAGGAAGCCTAGCCTGCAGCTCATTCTGGCTGCCAGTGTGG CCTTGGTAGCTGGACTCTTGGCCTGGTACTACATGTGA
Translation (315 aa): MSSEVETSEGVDESEKNSMAPEKENHTKMADLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLAT TALYFTYSALEEEMDRNKDHPAFAPLYFPTELHRKAALIKDMKYFFGENWEEQVKCSEAAQKYVDRIHYV GQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFEHVDNAQQFKQFYRARMNALDL NLKTKERIVEEANKAFEYNMQIFSELDQAGSMLARETLEDGLPVHDGKGDIRKCPFYAAQPDKGTLGGSN CPFQTTVAVLRKPSLQLILAASVALVAGLLAWYYM
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