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Report for CCDS20886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20886.1 Public Mus musculus 7 Foxa3 23 108 98 CCDS HistoryNCBI Gene:15377Re-query CCDS DB by CCDS ID:20886.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036018.5 ENSMUSP00000043173.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036018.5Link to Ensembl Protein Viewer:ENSMUSP00000043173.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036018Re-query CCDS DB by Protein ID:ENSMUSP00000043173
Original member Current member NCBI NM_008260.2 NP_032286.1 Accepted alive Link to Nucleotide Sequence:NM_008260.2Link to Protein Sequence:NP_032286.1Re-query CCDS DB by Nucleotide ID:NM_008260Re-query CCDS DB by Protein ID:NP_032286Link to BLAST:NP_032286.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032286.1 353 P35584 353 100% 0 0

Chromosomal Locations for CCDS 20886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19014138 19015130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19023349 19023417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGCTGGGCTCAGTGAAGATGGAGGCTCATGACCTGGCCGAGTGGAGCTACTACCCGGAGGCGGGCGAGG
TGTATTCTCCAGTGAATCCTGTGCCCACCATGGCCCCTCTCAACTCCTACATGACCTTGAACCCACTCAG
CTCTCCCTACCCTCCCGGAGGGCTTCAGGCCTCCCCACTGCCTACAGGACCCCTGGCACCCCCAGCCCCC
ACTGCGCCCTTGGGGCCCACCTTCCCAAGCTTGGGCACTGGTGGCAGCACCGGAGGCAGTGCTTCCGGGT
ATGTAGCCCCAGGGCCCGGGCTTGTACATGGAAAAGAGATGGCAAAGGGGTACCGGCGGCCACTGGCCCA
CGCCAAACCACCATATTCCTACATCTCTCTCATAACCATGGCTATTCAGCAGGCTCCAGGCAAGATGCTG
ACCCTGAGTGAAATCTACCAATGGATCATGGACCTCTTCCCGTACTACCGGGAGAACCAGCAACGTTGGC
AGAACTCCATCCGGCATTCGCTGTCCTTCAATGACTGCTTCGTCAAGGTGGCACGCTCCCCAGACAAGCC
AGGCAAAGGCTCCTACTGGGCCTTGCATCCCAGCTCTGGGAACATGTTTGAGAACGGCTGCTATCTCCGC
CGGCAGAAGCGCTTCAAGCTGGAGGAGAAGGCAAAGAAAGGAAACAGCGCCACATCGGCCAGCAGGAATG
GTACTGCGGGGTCAGCCACCTCTGCCACCACTACAGCTGCCACTGCAGTCACCTCCCCGGCTCAGCCCCA
GCCTACGCCATCTGAGCCCGAGGCCCAGAGTGGGGATGATGTGGGGGGTCTGGACTGCGCCTCACCTCCT
TCGTCCACACCTTATTTCAGCGGCCTGGAGCTCCCGGGGGAACTAAAGTTGGATGCGCCCTATAACTTCA
ACCACCCTTTCTCTATCAACAACCTGATGTCAGAACAGACATCGACACCTTCCAAACTGGATGTGGGGTT
TGGGGGCTACGGGGCTGAGAGTGGGGAGCCTGGAGTCTACTACCAGAGCCTCTATTCCCGCTCTCTGCTT
AATGCATCCTAG

Translation (353 aa):
MLGSVKMEAHDLAEWSYYPEAGEVYSPVNPVPTMAPLNSYMTLNPLSSPYPPGGLQASPLPTGPLAPPAP
TAPLGPTFPSLGTGGSTGGSASGYVAPGPGLVHGKEMAKGYRRPLAHAKPPYSYISLITMAIQQAPGKML
TLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLR
RQKRFKLEEKAKKGNSATSASRNGTAGSATSATTTAATAVTSPAQPQPTPSEPEAQSGDDVGGLDCASPP
SSTPYFSGLELPGELKLDAPYNFNHPFSINNLMSEQTSTPSKLDVGFGGYGAESGEPGVYYQSLYSRSLL
NAS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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