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Report for CCDS20140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20140.1 Public Mus musculus 6 Hoxa3 23 108 98 CCDS HistoryNCBI Gene:15400Re-query CCDS DB by CCDS ID:20140.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114434.8 ENSMUSP00000110077.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114434.8Link to Ensembl Protein Viewer:ENSMUSP00000110077.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114434Re-query CCDS DB by Protein ID:ENSMUSP00000110077
Original member NCBI NM_010452.3 NP_034582.1 Updated not alive Link to Nucleotide Sequence:NM_010452.3Link to Protein Sequence:NP_034582.1Re-query CCDS DB by Nucleotide ID:NM_010452Re-query CCDS DB by Protein ID:NP_034582
Current member NCBI NM_010452.4 NP_034582.1 Accepted alive Link to Nucleotide Sequence:NM_010452.4Link to Protein Sequence:NP_034582.1Re-query CCDS DB by Nucleotide ID:NM_010452Re-query CCDS DB by Protein ID:NP_034582Link to BLAST:NP_034582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034582.1 443 P02831 443 100% 0 0

Chromosomal Locations for CCDS 20140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52169940 52170742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52172121 52172649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCAAAAAGCGACCTACTACGACAGCTCAGCGATCTACGGTGGCTACCCCTACCAAGCAGCCAATGGGT
TCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTCCGCCGCTCTGGGCACCGATGGCGTTGAGTACCA
TCGACCTGCCTGCTCCCTCCAGTCTCCCGCCAGCGCTGGGGGCCACCCCAAAACTCATGAGCTGAGCGAA
GCTTGTCTGCGCACCCTGAGCGGCCCTCCTAGTCAGCCCCCAGGCCTGGGTGAACCACCTTTGCCTCCAC
CTCCTCCCCAGGCAGCGCCCCCAGCGCCCCAGCCTCCACAGCCCCCACCACAGCCCCCTGCGCCCACCCC
TGCAGCTCCTCCGCCTCCCTCGTCTGTCTCTCCCCCTCAAAGTGCCAACAGCAACCCTACCCCTGCCAGC
ACAGCCAAGAGCCCCCTGCTCAACTCTCCCACCGTGGGCAAACAAATCTTTCCCTGGATGAAAGAGTCAA
GGCAGAACACTAAGCAGAAAACCAGCGGCTCCAGCTCAGGGGAGAGCTGCGCTGGTGACAAGAGCCCGCC
TGGGCAGGCCTCGTCCAAGCGCGCGCGCACGGCGTACACGAGCGCGCAGCTGGTAGAGCTGGAGAAGGAG
TTCCACTTCAACCGCTACCTATGCCGGCCGCGCCGGGTGGAGATGGCCAACCTGCTGAACCTCACCGAGC
GCCAGATCAAGATCTGGTTCCAGAACCGCCGCATGAAGTACAAGAAAGACCAGAAGGGCAAAGGCATGCT
GACCTCGTCTGGGGGCCAGTCCCCAAGTCGGAGCCCTGTGCCTCCCGGTGCAGGAGGCTATCTGAATTCT
ATGCATTCGCTGGTCAACAGTGTCCCATATGAGCCCCAGTCACCCCCTCCTTTCTCCAAGCCTCCCCAAG
GCGCCTATGGGTTGCCTCCGGCCTCCTACCCTGCTCCCCTGCCCAGCTGCGCTCCCCCACCTCCCCCACA
GAAACGCTACACAGCGGCGGGGTCAGGCGCAGGGGGCACCCCTGACTACGACCCGCATGCTCACGGCCTG
CAGGGCAATGGCAGCTATGGGACCCCACACTTACAGGGAAGCCCCGTCTTCGTAGGGGGCAGCTATGTGG
AGCCCATGAGCAACTCTGGGCCACTCTTTGGCCTAACTCACCTCCCCCACACCACCTCGGCTGCCATGGA
CTACGGGGGCACTGGGCCGCTGGGCAGCGGACACCACCATGGGCCGGGGCCTGGGGAGCCACACCCCACC
TACACGGACCTTACTGCCCACCATCCTTCTCAGGGAAGAATTCAGGAAGCGCCCAAGCTCACCCACCTGT
GA

Translation (443 aa):
MQKATYYDSSAIYGGYPYQAANGFAYNASQQPYAPSAALGTDGVEYHRPACSLQSPASAGGHPKTHELSE
ACLRTLSGPPSQPPGLGEPPLPPPPPQAAPPAPQPPQPPPQPPAPTPAAPPPPSSVSPPQSANSNPTPAS
TAKSPLLNSPTVGKQIFPWMKESRQNTKQKTSGSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKE
FHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNS
MHSLVNSVPYEPQSPPPFSKPPQGAYGLPPASYPAPLPSCAPPPPPQKRYTAAGSGAGGTPDYDPHAHGL
QGNGSYGTPHLQGSPVFVGGSYVEPMSNSGPLFGLTHLPHTTSAAMDYGGTGPLGSGHHHGPGPGEPHPT
YTDLTAHHPSQGRIQEAPKLTHL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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