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Report for CCDS16147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16147.1 Public Mus musculus 2 Hoxd1 23 108 98 CCDS HistoryNCBI Gene:15429Re-query CCDS DB by CCDS ID:16147.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047793.5 ENSMUSP00000043078.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047793.5Link to Ensembl Protein Viewer:ENSMUSP00000043078.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047793Re-query CCDS DB by Protein ID:ENSMUSP00000043078
Original member Current member NCBI NM_010467.2 NP_034597.2 Accepted alive Link to Nucleotide Sequence:NM_010467.2Link to Protein Sequence:NP_034597.2Re-query CCDS DB by Nucleotide ID:NM_010467Re-query CCDS DB by Protein ID:NP_034597Link to BLAST:NP_034597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034597.2 328 Q01822 328 100% 0 0

Chromosomal Locations for CCDS 16147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74763102 74763753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74764055 74764389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGAGCTCTTACCTGGAGTACGTGTCGTGCGCCGCGGGCGGTGGCAGCGGAGGGGTAGGCGGCGACGTGC
TC
GGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGCAGCCGGCCTTCCCCCTGGG
C
AGCGGAGACGGCGCCTTCGTGAGCTGCCTGCCCCTGGCCACCGCTCGGCCCACGCCGTCGCCTCCCGCA
GGC
CCCGCTCAGTCCCCGGTCCCACAGCCCGCCGCGCCCCGGTACGCGCCCTGCACCCTGGAAGGCGCCT
AC
GAGCGGGGCGCCGCACCTGCCTCTGCCGCCGAGTATGGCTTCTTGGGGTCCGGGCCGGCGTTTGACTT
C
CCGGGCGCACTTGGGAGAGCGGCGGACGAGGGCGGGGCGCACGTCCACTATGCCACCTCGGCGGTCTTC
TCC
GGCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACTTCGCTGCCTTTGGCGAGCCTGGCCCCTTCC
CC
GCGTGTCTCAAGGAGCCCGCAGACGGCCACCCCGGGCCCTTTCAGACTGTGTCCCCGGCCCCTGGAGC
C
TGCCCCAAGCCGGCCTCTCCCACCTCCAGCCTCCCGGCCGCCCACAGCACTTTCGAGTGGATGAAAGTG
AAG
AGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTGCCATCCGCA
CA
AATTTCAGCACCAAGCAACTGACAGAGCTAGAGAAAGAGTTTCATTTCAATAAGTACCTAACTAGAGC
C
CGACGCATCGAGATAGCCAACTGTTTACAGCTGAATGACACCCAGGTCAAAATCTGGTTCCAGAACCGT
AGG
ATGAAGCAGAAGAAGAGGGAACGAGAGGGGCTTCTGGCCACAGCTGCCTCTGTGGCCTCGATTAAGC
TT
CCCCGGTCAGAAACAAGTCCCATCAAATCTGGCCGGAATCTAGGAAGCCCTTCTCAGGCTCAAGAGCC
T
TCCTGA


Translation (328 aa):
MSSYLEYVSCAAGGGSGGVGGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLATARPTPSPPA
G
PAQSPVPQPAAPRYAPCTLEGAYERGAAPASAAEYGFLGSGPAFDFPGALGRAADEGGAHVHYATSAVF
S
GGGSFLLSGQVDFAAFGEPGPFPACLKEPADGHPGPFQTVSPAPGACPKPASPTSSLPAAHSTFEWMKV
K
RNAPKK
SKLSEYGATSPPSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNR
R
MKQKKREREGLLATAASVASIKLPRSETSPIKSGRNLGSPSQAQEPS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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