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Report for CCDS3544.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3544.2 Public Homo sapiens 4 ENAM 24 110 108 CCDS HistoryNCBI Gene:10117Re-query CCDS DB by CCDS ID:3544.2Re-query CCDS DB by GeneID:10117See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3544.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396073.4 ENSP00000379383.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396073.4Link to Ensembl Protein Viewer:ENSP00000379383.4Re-query CCDS DB by Nucleotide ID:ENST00000396073Re-query CCDS DB by Protein ID:ENSP00000379383
Original member Current member NCBI NM_031889.3 NP_114095.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031889.3Link to Protein Sequence:NP_114095.2Re-query CCDS DB by Nucleotide ID:NM_031889Re-query CCDS DB by Protein ID:NP_114095Link to BLAST:NP_114095.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114095.2 1142 Q9NRM1 1142 100% 0 0

Chromosomal Locations for CCDS 3544.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70629501 70629554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70631670 70631738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70631849 70631893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70632651 70632692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70634308 70634568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70635832 70635894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70637790 70637843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70642015 70644855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGTTGGTGCTTCGGTGCAGGCTTGGAACCTCTTTTCCTAAACTAGATAACTTGGTACCAAAAGGCAAAA
TG
AAGATTCTCCTGGTCTTTCTAGGGCTTCTTGGTAATTCTGTTGCTATGCCAATGCACATGCCCCGAAT
G
CCTGGATTTAGCAGTAAAAGTGAGGAGATGATGCGGTATAATCAATTCAACTTTATGAACGGCCCACAT
ATG
GCACACCTGGGGCCCTTCTTTGGAAACGGTCTCCCTCAGCAATTTCCACAGTACCAGATGCCCATGT
GG
CCTCAGCCACCACCCAACACATGGCATCCACGGAAATCCTCAGCACCCAAACGTCATAACAAGACTGA
T
CAGACCCAAGAAACCCAGAAACCCAACCAGACTCAGTCAAAAAAGCCACCACAAAAGCGGCCTTTGAAG
CAG
CCATCACATAATCAACCTCAGCCCGAAGAGGAAGCTCAACCCCCTCAGGCATTCCCACCATTTGGAA
AT
GGGCTATTCCCCTATCAACAACCACCATGGCAAATTCCACAGAGGTTACCACCACCAGGTTATGGACG
C
CCACCAATCAGCAATGAAGAAGGGGGGAATCCTTACTTTGGATATTTTGGATATCATGGCTTTGGGGGT
CGC
CCTCCTTATTATTCAGAAGAAATGTTTGAACAAGATTTTGAAAAACCCAAAGAAGAAGATCCTCCTA
AA
GCAGAAAGTCCAGGCACAGAACCCACAGCTAATTCAACAGTCACTGAGACGAATTCTACCCAACCAAA
T
CCTAAAGGGAGTCAGGGAGGAAATGACACCAGCCCCACAGGAAACAGTACCCCAGGACTAAACACTGGG
AAC
AACCCTCCAGCTCAAAATGGGATTGGCCCACTCCCTGCAGTCAACGCTTCAGGCCAGGGAGGGCCAG
GA
AGTCAAATCCCATGGAGACCAAGTCAGCCAAATATTCGTGAAAATCATCCATATCCTAATATAAGAAA
T
TTTCCTTCAGGAAGACAGTGGTATTTCACTGGTACTGTCATGGGGCACAGACAGAATAGGCCTTTTTAC
AGA
AATCAACAAGTTCAAAGGGGTCCTCGGTGGAACTTCTTTGCTTGGGAACGTAAACAAGTAGCTCGTC
CA
GGAAATCCAGTTTATCACAAAGCTTACCCTCCTACTTCAAGAGGCAATTATCCCAATTATGCAGGAAA
T
CCAGCAAATCTCAGAAGAAAGCCTCAGGGGCCAAATAAACACCCTGTAGGAACTACTGTTGCCCCACTG
GGT
CCCAAACCTGGCCCTGTTGTTCGCAATGAAAAAATCCAAAATCCAAAGGAGAAGCCCCTGGGTCCAA
AA
GAACAAATAATAGTTCCTACAAAGAATCCAACCAGCCCCTGGAGAAACTCTCAACAGTATGAAGTTAA
T
AAATCAAATTATAAACTGCCTCACTCTGAGGGTTATATGCCAGTCCCAAATTTTAATTCTGTTGATCAA
CAT
GAAAACTCCTATTACCCAAGAGGAGATTCCAGAAAAGTCCCAAATTCTGATGGACAAACCCAAAGCC
AG
AATTTGCCCAAAGGGATTGTTTTAGGGTCAAGAAGGATGCCATATGAATCAGAAACTAATCAGTCAGA
A
TTAAAGCACAGCTCATATCAGCCTGCTGTATACCCTGAGGAAATCCCTTCTCCTGCAAAAGAACATTTT
CCT
GCTGGAAGAAATACTTGGGACCACCAAGAAATCTCTCCACCTTTTAAGGAAGATCCAGGGAGGCAAG
AA
GAACATTTACCCCATCCTTCCCATGGTTCTAGAGGAAGTGTTTTCTACCCTGAATATAACCCATATGA
T
CCCAGGGAAAACTCACCATACCTTAGAGGCAATACATGGGATGAGAGAGATGATTCTCCCAATACTATG
GGG
CAAAAAGAAAGTCCACTCTACCCCATAAATACCCCAGACCAGAAGGAGATAGTCCCTTATAATGAAG
AG
GACCCAGTTGATCCAACTGGAGATGAAGTCTTTCCTGGACAAAATAGATGGGGTGAAGAGTTGAGCTT
C
AAAGGAGGCCCAACAGTTAGGCACTATGAAGGTGAACAATATACCTCAAATCAGCCAAAGGAATATCTT
CCC
TATTCTTTAGATAATCCATCAAAACCAAGGGAGGATTTTTATTACAGTGAATTTTACCCATGGAGCC
CG
GATGAGAATTTTCCATCATATAATACAGCTTCTACTATGCCACCACCTATAGAGAGCAGGGGCTACTA
C
GTTAATAATGCCGCTGGACCAGAAGAAAGCACTCTATTTCCTTCACGGAATTCCTGGGACCACAGGATA
CAA
GCCCAAGGGCAGAGAGAAAGAAGGCCGTATTTTAACAGAAATATCTGGGATCAGGCAACACATTTAC
AA
AAAGCCCCAGCTAGGCCACCAGACCAGAAAGGTAACCAGCCCTATTACAGTAACACCCCAGCTGGGCT
T
CAGAAAAATCCAATATGGCATGAAGGTGAGAATTTGAACTATGGCATGCAAATAACTAGGATGAATTCT
CCA
GAGAGAGAACATTCATCTTTCCCTAACTTCATCCCACCAAGTTACCCATCAGGTCAAAAAGAAGCAC
AT
TTATTTCACCTAAGCCAGAGAGGCTCTTGCTGTGCTGGTAGCTCCACAGGGCCCAAGGACAATCCACT
A
GCTCTACAAGACTACACTCCATCCTATGGTCTTGCACCTGGGGAGAACCAAGACACCAGTCCTCTGTAT
ACA
GACGGTAGTCATACCAAGCAGACAAGAGATATCATCTCCCCAACAAGCATCCTACCAGGCCAAAGAA
AC
AGCTCAGAGAAGAGGGAAAGCCAAAACCCTTTTAGAGATGATGTGTCCACGCTGAGGAGGAACACACC
A
TGTTCTATAAAGAATCAACTGGGCCAAAAGGAAATTATGCCCTTTCCTGAAGCCAGTTCCCTTCAATCA
AAG
AATACACCTTGTCTCAAAAATGATCTTGGAGGAGATGGGAACAACATTCTGGAACAAGTTTTTGAAG
AC
AACCAGCTCAATGAAAGAACTGTTGACCTTACTCCTGAGCAGCTTGTTATTGGTACACCTGATGAAGG
C
TCCAATCCAGAAGGCATCCAAAGTCAAGTCCAAGAAAATGAGAGTGAGAGGCAACAGCAAAGACCATCT
AAC
ATTCTGCATTTGCCATGCTTTGGCTCCAAATTAGCAAAGCATCACTCTTCCACCACCGGAACTCCAT
CT
AGCGATGGAAGGCAAAGCCCATTTGATGGGGATTCAATTACGCCTACTGAAAATCCTAACACATTGGT
T
GAGTTAGCTACTGAGGAACAATTTAAGAGTATAAATGTAGACCCACTTGATGCAGATGAACACAGTCCA
TTT
GAATTCCTTCAAAGAGGGACCAATGTACAGGACCAGGTACAAGACTGCTTACTACTTCAGGCCTAG


Translation (1142 aa):
MLVLRCRLGTSFPKLDNLVPKGKMKILLVFLGLLGNSVAMPMHMPRMPGFSSKSEEMMRYNQFNFMNGPH
M
AHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLK
Q
PSHNQPQPEEEAQPPQ
AFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGG
R
PPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTG
N
NPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFY
R
NQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPL
G
PKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSVDQ
H
ENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPEEIPSPAKEHF
P
AGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPNTM
G
QKESPLYPINTPDQKEIVPYNEEDPVDPTGDEVFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYL
P
YSLDNPSKPREDFYYSEFYPWSPDENFPSYNTASTMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRI
Q
AQGQRERRPYFNRNIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGMQITRMNS
P
EREHSSFPNFIPPSYPSGQKEAHLFHLSQRGSCCAGSSTGPKDNPLALQDYTPSYGLAPGENQDTSPLY
T
DGSHTKQTRDIISPTSILPGQRNSSEKRESQNPFRDDVSTLRRNTPCSIKNQLGQKEIMPFPEASSLQS
K
NTPCLKNDLGGDGNNILEQVFEDNQLNERTVDLTPEQLVIGTPDEGSNPEGIQSQVQENESERQQQRPS
N
ILHLPCFGSKLAKHHSSTTGTPSSDGRQSPFDGDSITPTENPNTLVELATEEQFKSINVDPLDADEHSP
F
EFLQRGTNVQDQVQDCLLLQA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser