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Report for CCDS49762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49762.1 Public Mus musculus 16 Zc3h7a 23 108 98 CCDS HistoryNCBI Gene:106205Re-query CCDS DB by CCDS ID:49762.1Re-query CCDS DB by GeneID:106205See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49762.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037633.14 ENSMUSP00000041308.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037633.14Link to Ensembl Protein Viewer:ENSMUSP00000041308.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037633Re-query CCDS DB by Protein ID:ENSMUSP00000041308
Original member Current member NCBI NM_145931.3 NP_666043.2 Accepted alive Link to Nucleotide Sequence:NM_145931.3Link to Protein Sequence:NP_666043.2Re-query CCDS DB by Nucleotide ID:NM_145931Re-query CCDS DB by Protein ID:NP_666043Link to BLAST:NP_666043.2

Chromosomal Locations for CCDS 49762.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11137296 11137485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11139021 11139184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11140717 11140850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11141663 11141771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11145180 11145285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11145646 11145779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11146367 11146443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11147269 11147450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11148445 11148545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11149211 11149407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11150595 11150756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11151139 11151325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11151866 11151930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11153059 11153263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11156020 11156300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11156528 11156561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11158554 11158592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11158683 11158763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11158966 11159124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11161004 11161201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11162640 11162679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11164592 11164659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2913 nt):
ATGTCCAGTGTGTCCGAGGAGAGAAGAAAGAGGCAGCACAGCATAAAGGAAGGTCTACAGTTCATCCAGC
CTCCGCTGTCATATCCTGGGACCCAGGAGCAGTATGCGGTGTATTTGCATGCTCTCGTGAGAAATCTTTT
TAATGAAGGAAATGATATTTATCGGGAATGTGACTGGCGTGGCTCTCTAATTCAGTACTCAGAAGCTTTG
AGTATAGCTAATTATGCAAAGTCTGAAGAAATTTTAATTCCTACAGAAATCATTGAAAAACTTCGTATAA
ATCGTATTGCTTGCTATTCTAATATGGGCCTCCGTGATGAAGTTTTAGAAGACTGTAACGCTGTCCTCAG
TGTTAATGCCAGTAACTGCAAGGCTCTGTATCGGAAGGCTAAGGCTCTAAGTGACTTAGGGCACTACAGA
GAGGCCTACGACGCTGTGGCAAAGTGCTCCTTAGCAGTGCCTCAGGATGAACATGTAATAAAATTAACTC
AAGAATTAGCTCAGAAATTGGGATTTAAAATAAGGAAAGCATATGTTAGAGCTGAGCACTTACTGAAAGC
AGTTCCTGGGGATGGGGCTCCCAAGGCTGTGAACTATTCTGTGGAAGATATTGAGCCAGATTTGTTAGCC
CCAAGGCAAGAAGCACTTTCGGTTGCCTCCCTTCCTACATCCAGTTTTTCTCATGTCATTGGGAGTGAGC
TGGCCTCTGTTCCTATTATGCCGGTAACTTCTGTTTTGCAACTGCAAGTGGATGAGAGTCCTCTGCCATC
CACAGTGTTTGCAAATGGAGGGAAGATCCCCTTCACCATATCCGATGCTTTTCTGGATGATGACATTGTC
CTTGGGGATGAAATAGATGCTCTTCTTGATTCTGCCCCAGAAACAAATGATGCTGTTATGTCCTCCACTC
TGGTCAGAGGACCCCTCCCGACTGCCAGTGCAGCTCCGAGCTTGCCCTTCAGGACACAATCCCTGCTTGG
AACCTTGCCCATGGGTACAAGGTATCCTGAGCCCTCCTTTGCAGACTTTTTTCCACCTCTGACTTCATCC
TTGGAAGAATTTTACTCTTCTTTAAATTCATTTTCAGTGACTGAATCCAAACGAGATCTGTGCACCTCAA
CTGCTAGAGAGGGAACACCGCTTAACAACAGTAATTCCTCCCTTTTACTTATGAATGGACCAGGTAATTT
GTTGGCCTCTGAAAATTTTCTGGGAATTACAAGTCAGCCTAGAAATGACTTTGGAAACTTTTTTGGAAGT
GTGATCGCTAAACCATTTTCATCAGGGACTCCTAGGCATCCCCTCGAAGGAACCCACGAGCTGAGGCAAG
CTTGCCAGATCTGCTTTGTAAAATCAGGCCCTAAGTTAATGGATTTCACATACCATGCTAATGTAGATCA
TAAATGTAAGAAAGATATTTTAATTGGTAGGATAAAAAATGTTGAAGATAAATCATGGAAAAAAATACGT
CCAAGACCAACAAAAACAAATTATGAAGGACCATATTATATATGCAAAGATGTTGCTGCAGATGATGAAT
GCCGATATCCTGGCCACTGTACATTTGCTTATTGCCAAGAAGAGATAGATGTGTGGACCCTGGAAAGAAA
AGGGGCATTCAGTCGAGAGGCTTTCTTTGGGGGCAATGGAAAGATCAACCTTACTGTGGTCAGAATTCTC
CAAGAGCATCATGGAGAGTTTACATTCCTTTGTGAGAAATGTTTTGATCATAAACCTAGAATGATAAGTA
AAAGAAATAAAGATAATTCCACTGCCTGCTCTCACCCCGTCACAAAGCATGAATTTGAGGACAATAAGTG
CCTTGTCCACATTTTGAGAGAGACCACAGTAAAATATTCCAAAATACGTTCTTTTCATAAACAATGTCAA
TTTGATATTTGTCGACATGAAGTTCGTTATGGCTGCGTGAGGGAAGATGAGTGCTTCTATGCCCATAGTC
TTATTGAACTGAAAGTCTGGATAATGCAAAGTGAAAGAGGTATCTCCCATGATGATATTGCTCAACAATC
CAAACAATATTGGAGAAGTTTGCAAGCAAGCATGCCGGGAGTGCAGGTCCTTGGTAATCAAATAATGCCT
GGATTACTTAACATGGAGATAAAGTTTGTATGTGCTCAGTGTCTGAGAAATGGCCAAGTCATTGAACCAG
ACAGGAACAGAAAGTACTGCAGTGCCAAAGCACAGCATTCGTGGACCAAAGAACGTCGTGCAATGAGAGC
GATGTCTTTTGAACGTAAGAAGTGGATGAACATCCGTCCTCTCCCCACAAAGAAACAAATGCCTTTACAG
TTTGATCTATGCAACCATATTGCTAATAGAAAAAAGTGTCAGTATGTTGGCAACTGTTCCTTTGCTCATA
GTCCAGAGGAGCGGGAAGTGTGGACTTACATGAAGGATAACAAAATACATGATATAGAGCAATTTTATGA
ACTCTGGCTGAAGAACCAAAAAACTGAAAAAAGTGATGAGACAGCCAGTCACTGTAGCAAAGAAAACGGG
AAGCAGATCCATATGCCAACAGACTATGCTGAAGTCACTGTGGACTTCCACTGCTGGATGTGTGGGAAGA
ACTGTAACAGTGAGAAGCAATGGCAAGACCACATCTCCTCTGAGAAGCACAAGGAGAAGGTTTTCCACAC
TGAGGATGACCAGTACTGCTGGCAGCACCGCTTCCCCACTGGGTACTTCAGTATTTGTGAGAGGTATATA
AATGGCTCCTGCACAGAAGGAAGCAGCTGTAAATTTGCACATGGAAATGCTGAACTTCATGAATGGGAAG
AAAGAAGAAAGGCCCTACAGATGAAATTCAAGAAAGCACGGAAAGATCACTTAATTGCCCCAAATGATAA
TGACTTTGGAAAATATAGTTTTTTGTTTAAAGATTTAAAGTAA

Translation (970 aa):
MSSVSEERRKRQHSIKEGLQFIQPPLSYPGTQEQYAVYLHALVRNLFNEGNDIYRECDWRGSLIQYSEAL
SIANYAKSEEILIPTEIIEKLRINRIACYSNMGLRDEVLEDCNAVLSVNASNCKALYRKAKALSDLGHYR
EAYDAVAKCSLAVPQDEHVIKLTQELAQKLGFKIRKAYVRAEHLLKAVPGDGAPKAVNYSVEDIEPDLLA
PRQEALSVASLPTSSFSHVIGSELASVPIMPVTSVLQLQVDESPLPSTVFANGGKIPFTISDAFLDDDIV
LGDEIDALLDSAPETNDAVMSSTLVRGPLPTASAAPSLPFRTQSLLGTLPMGTRYPEPSFADFFPPLTSS
LEEFYSSLNSFSVTESKRDLCTSTAREGTPLNNSNSSLLLMNGPGNLLASENFLGITSQPRNDFGNFFGS
VIAKPFSSGTPRHPLEGTHELRQACQICFVKSGPKLMDFTYHANVDHKCKKDILIGRIKNVEDKSWKKIR
PRPTKTNYEGPYYICKDVAADDECRYPGHCTFAYCQEEIDVWTLERKGAFSREAFFGGNGKINLTVVRIL
QEHHGEFTFLCEKCFDHKPRMISKRNKDNSTACSHPVTKHEFEDNKCLVHILRETTVKYSKIRSFHKQCQ
FDICRHEVRYGCVREDECFYAHSLIELKVWIMQSERGISHDDIAQQSKQYWRSLQASMPGVQVLGNQIMP
GLLNMEIKFVCAQCLRNGQVIEPDRNRKYCSAKAQHSWTKERRAMRAMSFERKKWMNIRPLPTKKQMPLQ
FDLCNHIANRKKCQYVGNCSFAHSPEEREVWTYMKDNKIHDIEQFYELWLKNQKTEKSDETASHCSKENG
KQIHMPTDYAEVTVDFHCWMCGKNCNSEKQWQDHISSEKHKEKVFHTEDDQYCWQHRFPTGYFSICERYI
NGSCTEGSSCKFAHGNAELHEWEERRKALQMKFKKARKDHLIAPNDNDFGKYSFLFKDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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